Givan SA - Search Results

1

The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis.

Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J. Mockler TC, et al. Among authors: givan sa. Cold Spring Harb Symp Quant Biol. 2007;72:353-63. doi: 10.1101/sqb.2007.72.006. Cold Spring Harb Symp Quant Biol. 2007. PMID: 18419293

2

Genome-wide profiling and analysis of Arabidopsis siRNAs.

Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Carrington JC. Kasschau KD, et al. Among authors: givan sa. PLoS Biol. 2007 Mar;5(3):e57. doi: 10.1371/journal.pbio.0050057. PLoS Biol. 2007. PMID: 17298187 Free PMC article.

3

The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases.

Givan SA, Sullivan CM, Carrington JC. Givan SA, et al. BMC Bioinformatics. 2007 Dec 18;8:479. doi: 10.1186/1471-2105-8-479. BMC Bioinformatics. 2007. PMID: 18088438 Free PMC article.

4

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules.

Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. Michael TP, et al. Among authors: givan sa. PLoS Genet. 2008 Feb;4(2):e14. doi: 10.1371/journal.pgen.0040014. PLoS Genet. 2008. PMID: 18248097 Free PMC article.

5

Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Filichkin SA, et al. Among authors: givan sa. Genome Res. 2010 Jan;20(1):45-58. doi: 10.1101/gr.093302.109. Epub 2009 Oct 26. Genome Res. 2010. PMID: 19858364 Free PMC article.

6

Update of ASRP: the Arabidopsis Small RNA Project database.

Backman TW, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, Fahlgren N, Givan SA, Carrington JC, Kasschau KD. Backman TW, et al. Among authors: givan sa. Nucleic Acids Res. 2008 Jan;36(Database issue):D982-5. doi: 10.1093/nar/gkm997. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 17999994 Free PMC article.

7

Computational and analytical framework for small RNA profiling by high-throughput sequencing.

Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC. Fahlgren N, et al. Among authors: givan sa. RNA. 2009 May;15(5):992-1002. doi: 10.1261/rna.1473809. Epub 2009 Mar 23. RNA. 2009. PMID: 19307293 Free PMC article.

8

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.

Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC. Fahlgren N, et al. Among authors: givan sa. PLoS One. 2007 Feb 14;2(2):e219. doi: 10.1371/journal.pone.0000219. PLoS One. 2007. PMID: 17299599 Free PMC article.

9

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting.

Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC. Howell MD, et al. Among authors: givan sa. Plant Cell. 2007 Mar;19(3):926-42. doi: 10.1105/tpc.107.050062. Epub 2007 Mar 30. Plant Cell. 2007. PMID: 17400893 Free PMC article.

10

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC. Fahlgren N, et al. Among authors: givan sa. Plant Cell. 2010 Apr;22(4):1074-89. doi: 10.1105/tpc.110.073999. Epub 2010 Apr 20. Plant Cell. 2010. PMID: 20407027 Free PMC article.

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