Glazier JA - Search Results

1

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.

Sluka JP, Shirinifard A, Swat M, Cosmanescu A, Heiland RW, Glazier JA. Sluka JP, et al. Among authors: glazier ja. Bioinformatics. 2014 Aug 15;30(16):2367-74. doi: 10.1093/bioinformatics/btu210. Epub 2014 Apr 22. Bioinformatics. 2014. PMID: 24755304 Free PMC article.

2

CompuCell, a multi-model framework for simulation of morphogenesis.

Izaguirre JA, Chaturvedi R, Huang C, Cickovski T, Coffland J, Thomas G, Forgacs G, Alber M, Hentschel G, Newman SA, Glazier JA. Izaguirre JA, et al. Among authors: glazier ja. Bioinformatics. 2004 May 1;20(7):1129-37. doi: 10.1093/bioinformatics/bth050. Epub 2004 Feb 5. Bioinformatics. 2004. PMID: 14764549

3

Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick.

Glazier JA, Zhang Y, Swat M, Zaitlen B, Schnell S. Glazier JA, et al. Curr Top Dev Biol. 2008;81:205-47. doi: 10.1016/S0070-2153(07)81007-6. Curr Top Dev Biol. 2008. PMID: 18023729 Free PMC article. Review.

4

Adhesion between cells, diffusion of growth factors, and elasticity of the AER produce the paddle shape of the chick limb.

Popławski NJ, Swat M, Gens JS, Glazier JA. Popławski NJ, et al. Among authors: glazier ja. Physica A. 2007 Jan 1;373:521-532. doi: 10.1016/j.physa.2006.05.028. Physica A. 2007. PMID: 18167520 Free PMC article.

5

Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment.

Popławski NJ, Shirinifard A, Swat M, Glazier JA. Popławski NJ, et al. Among authors: glazier ja. Math Biosci Eng. 2008 Apr;5(2):355-88. doi: 10.3934/mbe.2008.5.355. Math Biosci Eng. 2008. PMID: 18613738 Free PMC article.

6

Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth.

Merks RM, Perryn ED, Shirinifard A, Glazier JA. Merks RM, et al. Among authors: glazier ja. PLoS Comput Biol. 2008 Sep 19;4(9):e1000163. doi: 10.1371/journal.pcbi.1000163. PLoS Comput Biol. 2008. PMID: 18802455 Free PMC article.

7

Front instabilities and invasiveness of simulated avascular tumors.

Popławski NJ, Agero U, Gens JS, Swat M, Glazier JA, Anderson AR. Popławski NJ, et al. Among authors: glazier ja. Bull Math Biol. 2009 Jul;71(5):1189-227. doi: 10.1007/s11538-009-9399-5. Epub 2009 Feb 21. Bull Math Biol. 2009. PMID: 19234746 Free PMC article.

8

Multicell simulations of development and disease using the CompuCell3D simulation environment.

Swat MH, Hester SD, Balter AI, Heiland RW, Zaitlen BL, Glazier JA. Swat MH, et al. Among authors: glazier ja. Methods Mol Biol. 2009;500:361-428. doi: 10.1007/978-1-59745-525-1_13. Methods Mol Biol. 2009. PMID: 19399437 Free PMC article.

9

3D multi-cell simulation of tumor growth and angiogenesis.

Shirinifard A, Gens JS, Zaitlen BL, Popławski NJ, Swat M, Glazier JA. Shirinifard A, et al. Among authors: glazier ja. PLoS One. 2009 Oct 16;4(10):e7190. doi: 10.1371/journal.pone.0007190. PLoS One. 2009. PMID: 19834621 Free PMC article.

10

Front instabilities and invasiveness of simulated 3D avascular tumors.

Poplawski NJ, Shirinifard A, Agero U, Gens JS, Swat M, Glazier JA. Poplawski NJ, et al. Among authors: glazier ja. PLoS One. 2010 May 26;5(5):e10641. doi: 10.1371/journal.pone.0010641. PLoS One. 2010. PMID: 20520818 Free PMC article.

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