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PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore.
Nat Commun. 2018 Sep 10;9(1):3661. doi: 10.1038/s41467-018-06097-1.
Nat Commun. 2018.
PMID: 30202038
Free PMC article.
Recent advances in computational protein design.
Pantazes RJ, Grisewood MJ, Maranas CD.
Pantazes RJ, et al. Among authors: grisewood mj.
Curr Opin Struct Biol. 2011 Aug;21(4):467-72. doi: 10.1016/j.sbi.2011.04.005. Epub 2011 May 18.
Curr Opin Struct Biol. 2011.
PMID: 21600758
Review.
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IPRO+/-: Computational Protein Design Tool Allowing for Insertions and Deletions.
Chowdhury R, Grisewood MJ, Boorla VS, Yan Q, Pfleger BF, Maranas CD.
Chowdhury R, et al. Among authors: grisewood mj.
Structure. 2020 Dec 1;28(12):1344-1357.e4. doi: 10.1016/j.str.2020.08.003. Epub 2020 Aug 27.
Structure. 2020.
PMID: 32857964
Free article.
Item in Clipboard
The Iterative Protein Redesign and Optimization (IPRO) suite of programs.
Pantazes RJ, Grisewood MJ, Li T, Gifford NP, Maranas CD.
Pantazes RJ, et al. Among authors: grisewood mj.
J Comput Chem. 2015 Feb 5;36(4):251-63. doi: 10.1002/jcc.23796. Epub 2014 Dec 2.
J Comput Chem. 2015.
PMID: 25448866
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Methane oxidation by anaerobic archaea for conversion to liquid fuels.
Mueller TJ, Grisewood MJ, Nazem-Bokaee H, Gopalakrishnan S, Ferry JG, Wood TK, Maranas CD.
Mueller TJ, et al. Among authors: grisewood mj.
J Ind Microbiol Biotechnol. 2015 Mar;42(3):391-401. doi: 10.1007/s10295-014-1548-7. Epub 2014 Nov 27.
J Ind Microbiol Biotechnol. 2015.
PMID: 25427790
Review.
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OptZyme: computational enzyme redesign using transition state analogues.
Grisewood MJ, Gifford NP, Pantazes RJ, Li Y, Cirino PC, Janik MJ, Maranas CD.
Grisewood MJ, et al.
PLoS One. 2013 Oct 7;8(10):e75358. doi: 10.1371/journal.pone.0075358. eCollection 2013.
PLoS One. 2013.
PMID: 24116038
Free PMC article.
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Computational Redesign of Acyl-ACP Thioesterase with Improved Selectivity toward Medium-Chain-Length Fatty Acids.
Grisewood MJ, Hernandez Lozada NJ, Thoden JB, Gifford NP, Mendez-Perez D, Schoenberger HA, Allan MF, Floy ME, Lai RY, Holden HM, Pfleger BF, Maranas CD.
Grisewood MJ, et al.
ACS Catal. 2017 Jun 2;7(6):3837-3849. doi: 10.1021/acscatal.7b00408. Epub 2017 Apr 20.
ACS Catal. 2017.
PMID: 29375928
Free PMC article.
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Reliable and Accurate Solution to the Induced Fit Docking Problem for Protein-Ligand Binding.
Miller EB, Murphy RB, Sindhikara D, Borrelli KW, Grisewood MJ, Ranalli F, Dixon SL, Jerome S, Boyles NA, Day T, Ghanakota P, Mondal S, Rafi SB, Troast DM, Abel R, Friesner RA.
Miller EB, et al. Among authors: grisewood mj.
J Chem Theory Comput. 2021 Apr 13;17(4):2630-2639. doi: 10.1021/acs.jctc.1c00136. Epub 2021 Mar 29.
J Chem Theory Comput. 2021.
PMID: 33779166
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