Gupta R - Search Results

1

The H3K27me3 demethylase dUTX is a suppressor of Notch- and Rb-dependent tumors in Drosophila.

Herz HM, Madden LD, Chen Z, Bolduc C, Buff E, Gupta R, Davuluri R, Shilatifard A, Hariharan IK, Bergmann A. Herz HM, et al. Among authors: gupta r. Mol Cell Biol. 2010 May;30(10):2485-97. doi: 10.1128/MCB.01633-09. Epub 2010 Mar 8. Mol Cell Biol. 2010. PMID: 20212086 Free PMC article.

2

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.

Pal S, Gupta R, Davuluri RV. Pal S, et al. Among authors: gupta r. Methods Mol Biol. 2014;1176:1-9. doi: 10.1007/978-1-4939-0992-6_1. Methods Mol Biol. 2014. PMID: 25030914

3

Tree-based position weight matrix approach to model transcription factor binding site profiles.

Bi Y, Kim H, Gupta R, Davuluri RV. Bi Y, et al. Among authors: gupta r. PLoS One. 2011;6(9):e24210. doi: 10.1371/journal.pone.0024210. Epub 2011 Sep 2. PLoS One. 2011. PMID: 21912677 Free PMC article.

4

Alternative transcription and alternative splicing in cancer.

Pal S, Gupta R, Davuluri RV. Pal S, et al. Among authors: gupta r. Pharmacol Ther. 2012 Dec;136(3):283-94. doi: 10.1016/j.pharmthera.2012.08.005. Epub 2012 Aug 14. Pharmacol Ther. 2012. PMID: 22909788 Review.

5

MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data.

Gupta R, Bhattacharyya A, Agosto-Perez FJ, Wickramasinghe P, Davuluri RV. Gupta R, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D92-7. doi: 10.1093/nar/gkq1171. Epub 2010 Nov 21. Nucleic Acids Res. 2011. PMID: 21097880 Free PMC article.

6

Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data.

Gupta R, Wikramasinghe P, Bhattacharyya A, Perez FA, Pal S, Davuluri RV. Gupta R, et al. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1(Suppl 1):S65. doi: 10.1186/1471-2105-11-S1-S65. BMC Bioinformatics. 2010. PMID: 20122241 Free PMC article.

7

IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data.

Kim H, Bi Y, Pal S, Gupta R, Davuluri RV. Kim H, et al. Among authors: gupta r. BMC Bioinformatics. 2011 Jul 27;12:305. doi: 10.1186/1471-2105-12-305. BMC Bioinformatics. 2011. PMID: 21794104 Free PMC article.

8

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.

Sun H, Wu J, Wickramasinghe P, Pal S, Gupta R, Bhattacharyya A, Agosto-Perez FJ, Showe LC, Huang TH, Davuluri RV. Sun H, et al. Among authors: gupta r. Nucleic Acids Res. 2011 Jan;39(1):190-201. doi: 10.1093/nar/gkq775. Epub 2010 Sep 14. Nucleic Acids Res. 2011. PMID: 20843783 Free PMC article.

9

CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation.

Plasschaert RN, Vigneau S, Tempera I, Gupta R, Maksimoska J, Everett L, Davuluri R, Mamorstein R, Lieberman PM, Schultz D, Hannenhalli S, Bartolomei MS. Plasschaert RN, et al. Among authors: gupta r. Nucleic Acids Res. 2014 Jan;42(2):774-89. doi: 10.1093/nar/gkt910. Epub 2013 Oct 10. Nucleic Acids Res. 2014. PMID: 24121688 Free PMC article.

10

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.

Pal S, Gupta R, Kim H, Wickramasinghe P, Baubet V, Showe LC, Dahmane N, Davuluri RV. Pal S, et al. Among authors: gupta r. Genome Res. 2011 Aug;21(8):1260-72. doi: 10.1101/gr.120535.111. Epub 2011 Jun 28. Genome Res. 2011. PMID: 21712398 Free PMC article.

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