Hiller M - Search Results

1

Hundreds of conserved non-coding genomic regions are independently lost in mammals.

Hiller M, Schaar BT, Bejerano G. Hiller M, et al. Nucleic Acids Res. 2012 Dec;40(22):11463-76. doi: 10.1093/nar/gks905. Epub 2012 Oct 5. Nucleic Acids Res. 2012. PMID: 23042682 Free PMC article.

2

GREAT improves functional interpretation of cis-regulatory regions.

McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, Lowe CB, Wenger AM, Bejerano G. McLean CY, et al. Among authors: hiller m. Nat Biotechnol. 2010 May;28(5):495-501. doi: 10.1038/nbt.1630. Epub 2010 May 2. Nat Biotechnol. 2010. PMID: 20436461 Free PMC article.

3

A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among related species.

Hiller M, Schaar BT, Indjeian VB, Kingsley DM, Hagey LR, Bejerano G. Hiller M, et al. Cell Rep. 2012 Oct 25;2(4):817-23. doi: 10.1016/j.celrep.2012.08.032. Epub 2012 Sep 27. Cell Rep. 2012. PMID: 23022484 Free PMC article.

4

Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish.

Hiller M, Agarwal S, Notwell JH, Parikh R, Guturu H, Wenger AM, Bejerano G. Hiller M, et al. Nucleic Acids Res. 2013 Aug;41(15):e151. doi: 10.1093/nar/gkt557. Epub 2013 Jun 27. Nucleic Acids Res. 2013. PMID: 23814184 Free PMC article.

5

Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation.

Sharma V, Elghafari A, Hiller M. Sharma V, et al. Among authors: hiller m. Nucleic Acids Res. 2016 Jun 20;44(11):e103. doi: 10.1093/nar/gkw210. Epub 2016 Mar 25. Nucleic Acids Res. 2016. PMID: 27016733 Free PMC article.

6

Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution.

Roscito JG, Sameith K, Parra G, Langer BE, Petzold A, Moebius C, Bickle M, Rodrigues MT, Hiller M. Roscito JG, et al. Among authors: hiller m. Nat Commun. 2018 Nov 9;9(1):4737. doi: 10.1038/s41467-018-07122-z. Nat Commun. 2018. PMID: 30413698 Free PMC article.

7

TFforge utilizes large-scale binding site divergence to identify transcriptional regulators involved in phenotypic differences.

Langer BE, Hiller M. Langer BE, et al. Among authors: hiller m. Nucleic Acids Res. 2019 Feb 28;47(4):e19. doi: 10.1093/nar/gky1200. Nucleic Acids Res. 2019. PMID: 30496469 Free PMC article.

8

Evolutionary constraint and innovation across hundreds of placental mammals.

Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, Goodman DB, Goodman L, Keough KC, Kirilenko B, Kowalczyk A, Lawless C, Lind AL, Meadows JRS, Moreira LR, Redlich RW, Ryan L, Swofford R, Valenzuela A, Wagner F, Wallerman O, Brown AR, Damas J, Fan K, Gatesy J, Grimshaw J, Johnson J, Kozyrev SV, Lawler AJ, Marinescu VD, Morrill KM, Osmanski A, Paulat NS, Phan BN, Reilly SK, Schäffer DE, Steiner C, Supple MA, Wilder AP, Wirthlin ME, Xue JR; Zoonomia Consortium§; Birren BW, Gazal S, Hubley RM, Koepfli KP, Marques-Bonet T, Meyer WK, Nweeia M, Sabeti PC, Shapiro B, Smit AFA, Springer MS, Teeling EC, Weng Z, Hiller M, Levesque DL, Lewin HA, Murphy WJ, Navarro A, Paten B, Pollard KS, Ray DA, Ruf I, Ryder OA, Pfenning AR, Lindblad-Toh K, Karlsson EK. Christmas MJ, et al. Among authors: hiller m. Science. 2023 Apr 28;380(6643):eabn3943. doi: 10.1126/science.abn3943. Epub 2023 Apr 28. Science. 2023. PMID: 37104599 Free PMC article.

9

Non-EST based prediction of exon skipping and intron retention events using Pfam information.

Hiller M, Huse K, Platzer M, Backofen R. Hiller M, et al. Nucleic Acids Res. 2005 Oct 4;33(17):5611-21. doi: 10.1093/nar/gki870. Print 2005. Nucleic Acids Res. 2005. PMID: 16204458 Free PMC article.

10

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences.

Prudent X, Parra G, Schwede P, Roscito JG, Hiller M. Prudent X, et al. Among authors: hiller m. Mol Biol Evol. 2016 Aug;33(8):2135-50. doi: 10.1093/molbev/msw098. Epub 2016 May 24. Mol Biol Evol. 2016. PMID: 27222536 Free PMC article.

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