Hodgman TC - Search Results

1

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data.

Levitsky VG, Kulakovskiy IV, Ershov NI, Oshchepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Levitsky VG, et al. Among authors: hodgman tc. BMC Genomics. 2014 Jan 29;15(1):80. doi: 10.1186/1471-2164-15-80. BMC Genomics. 2014. PMID: 24472686 Free PMC article.

2

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

Levitsky VG, Ignatieva EV, Ananko EA, Turnaev II, Merkulova TI, Kolchanov NA, Hodgman TC. Levitsky VG, et al. Among authors: hodgman tc. BMC Bioinformatics. 2007 Dec 19;8:481. doi: 10.1186/1471-2105-8-481. BMC Bioinformatics. 2007. PMID: 18093302 Free PMC article.

3

[Method SiteGA for the recognition of transcription factor binding sites].

Levitskiĭ VG, Ignat'eva EV, Anan'ko EA, Merkulova TI, Kolchanov NA, Hodgman TC. Levitskiĭ VG, et al. Among authors: hodgman tc. Biofizika. 2006 Jul-Aug;51(4):633-9. Biofizika. 2006. PMID: 16909840 Russian.

4

Constructing an enzyme-centric view of metabolism.

Horne AB, Hodgman TC, Spence HD, Dalby AR. Horne AB, et al. Among authors: hodgman tc. Bioinformatics. 2004 Sep 1;20(13):2050-5. doi: 10.1093/bioinformatics/bth199. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073012

5

Mathematical simulation and analysis of cellular metabolism and regulation.

Goryanin I, Hodgman TC, Selkov E. Goryanin I, et al. Among authors: hodgman tc. Bioinformatics. 1999 Sep;15(9):749-58. doi: 10.1093/bioinformatics/15.9.749. Bioinformatics. 1999. PMID: 10498775

6

Inference of gene regulatory networks using boolean-network inference methods.

Hickman GJ, Hodgman TC. Hickman GJ, et al. Among authors: hodgman tc. J Bioinform Comput Biol. 2009 Dec;7(6):1013-29. doi: 10.1142/s0219720009004448. J Bioinform Comput Biol. 2009. PMID: 20014476 Review.

7

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: hodgman tc. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808

8

Automated management of gene discovery projects.

Taylor S, Hodgman TC, Littler CB, Sayle RA, Gill RW, Oxer MD, O'Donnell CH, Lyall A. Taylor S, et al. Among authors: hodgman tc. Bioinformatics. 1998;14(2):217-8. doi: 10.1093/bioinformatics/14.2.217. Bioinformatics. 1998. PMID: 9545455

9

A historical perspective on gene/protein functional assignment.

Hodgman TC. Hodgman TC. Bioinformatics. 2000 Jan;16(1):10-5. doi: 10.1093/bioinformatics/16.1.10. Bioinformatics. 2000. PMID: 10812472

10

Simultaneous modelling of metabolic, genetic and product-interaction networks.

Juty NS, Spence HD, Hotz HR, Tang H, Goryanin I, Hodgman TC. Juty NS, et al. Among authors: hodgman tc. Brief Bioinform. 2001 Sep;2(3):223-32. doi: 10.1093/bib/2.3.223. Brief Bioinform. 2001. PMID: 11589583

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