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PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.
Nucleic Acids Res. 2020 Jul 2;48(W1):W77-W84. doi: 10.1093/nar/gkaa339.
Nucleic Acids Res. 2020.
PMID: 32421769
Free PMC article.
Insights from analyses of low complexity regions with canonical methods for protein sequence comparison.
Jarnot P, Ziemska-Legiecka J, Grynberg M, Gruca A.
Jarnot P, et al.
Brief Bioinform. 2022 Sep 20;23(5):bbac299. doi: 10.1093/bib/bbac299.
Brief Bioinform. 2022.
PMID: 35914952
Free PMC article.
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Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.
Tørresen OK, Star B, Mier P, Andrade-Navarro MA, Bateman A, Jarnot P, Gruca A, Grynberg M, Kajava AV, Promponas VJ, Anisimova M, Jakobsen KS, Linke D.
Tørresen OK, et al. Among authors: jarnot p.
Nucleic Acids Res. 2019 Dec 2;47(21):10994-11006. doi: 10.1093/nar/gkz841.
Nucleic Acids Res. 2019.
PMID: 31584084
Free PMC article.
Review.
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Common low complexity regions for SARS-CoV-2 and human proteomes as potential multidirectional risk factor in vaccine development.
Gruca A, Ziemska-Legiecka J, Jarnot P, Sarnowska E, Sarnowski TJ, Grynberg M.
Gruca A, et al. Among authors: jarnot p.
BMC Bioinformatics. 2021 Apr 8;22(1):182. doi: 10.1186/s12859-021-04017-7.
BMC Bioinformatics. 2021.
PMID: 33832440
Free PMC article.
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Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase.
Kubáň V, Srb P, Štégnerová H, Padrta P, Zachrdla M, Jaseňáková Z, Šanderová H, Vítovská D, Krásný L, Koval' T, Dohnálek J, Ziemska-Legiecka J, Grynberg M, Jarnot P, Gruca A, Jensen MR, Blackledge M, Žídek L.
Kubáň V, et al. Among authors: jarnot p.
J Am Chem Soc. 2019 Oct 23;141(42):16817-16828. doi: 10.1021/jacs.9b07837. Epub 2019 Oct 10.
J Am Chem Soc. 2019.
PMID: 31550880
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