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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.
D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J. D'haeseleer P, et al. Among authors: karaoz u. Stand Genomic Sci. 2017 Nov 15;12:67. doi: 10.1186/s40793-017-0279-6. eCollection 2017. Stand Genomic Sci. 2017. PMID: 29167704 Free PMC article.
Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle.
Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA 3rd, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, Adkins JN, Pett-Ridge J, Brodie EL. Ceja-Navarro JA, et al. Among authors: karaoz u. Nat Microbiol. 2019 May;4(5):864-875. doi: 10.1038/s41564-019-0384-y. Epub 2019 Mar 11. Nat Microbiol. 2019. PMID: 30858574
Niche differentiation is spatially and temporally regulated in the rhizosphere.
Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Nuccio EE, et al. Among authors: karaoz u. ISME J. 2020 Apr;14(4):999-1014. doi: 10.1038/s41396-019-0582-x. Epub 2020 Jan 17. ISME J. 2020. PMID: 31953507 Free PMC article.
Thousands of small, novel genes predicted in global phage genomes.
Fremin BJ, Bhatt AS, Kyrpides NC; Global Phage Small Open Reading Frame (GP-SmORF) Consortium. Fremin BJ, et al. Cell Rep. 2022 Jun 21;39(12):110984. doi: 10.1016/j.celrep.2022.110984. Cell Rep. 2022. PMID: 35732113 Free PMC article.
Exometabolite niche partitioning among sympatric soil bacteria.
Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Baran R, et al. Among authors: karaoz u. Nat Commun. 2015 Sep 22;6:8289. doi: 10.1038/ncomms9289. Nat Commun. 2015. PMID: 26392107 Free PMC article.
52 results