Kaushik S - Search Results

1

Structural analysis of prolyl oligopeptidases using molecular docking and dynamics: insights into conformational changes and ligand binding.

Kaushik S, Sowdhamini R. Kaushik S, et al. PLoS One. 2011;6(11):e26251. doi: 10.1371/journal.pone.0026251. Epub 2011 Nov 23. PLoS One. 2011. PMID: 22132071 Free PMC article.

2

Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage.

Kaushik S, Mutt E, Chellappan A, Sankaran S, Srinivasan N, Sowdhamini R. Kaushik S, et al. PLoS One. 2013;8(2):e56449. doi: 10.1371/journal.pone.0056449. Epub 2013 Feb 20. PLoS One. 2013. PMID: 23437136 Free PMC article.

3

Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations.

Kaushik S, Etchebest C, Sowdhamini R. Kaushik S, et al. Proteins. 2014 Jul;82(7):1428-43. doi: 10.1002/prot.24511. Epub 2014 Feb 6. Proteins. 2014. PMID: 24500901

4

Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages.

Kaushik S, Sowdhamini R. Kaushik S, et al. BMC Genomics. 2014 Nov 18;15(1):985. doi: 10.1186/1471-2164-15-985. BMC Genomics. 2014. PMID: 25407321 Free PMC article.

5

Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.

Kaushik S, Nair AG, Mutt E, Subramanian HP, Sowdhamini R. Kaushik S, et al. Bioinformatics. 2016 Feb 1;32(3):338-44. doi: 10.1093/bioinformatics/btv538. Epub 2015 Oct 10. Bioinformatics. 2016. PMID: 26454276

6

Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.

Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N, Lingu CS, Mahita J, Malarini R, Malhotra S, Malini M, Mathew OK, Mutt E, Naika M, Nitish S, Pasha SN, Raghavender US, Rajamani A, Shilpa S, Shingate PN, Singh HR, Sukhwal A, Sunitha MS, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R. Upadhyay AK, et al. Among authors: kaushik s. BMC Plant Biol. 2015 Aug 28;15:212. doi: 10.1186/s12870-015-0562-x. BMC Plant Biol. 2015. PMID: 26315624 Free PMC article.

7

Computational Analysis of the Domain Architecture and Substrate-Gating Mechanism of Prolyl Oligopeptidases from Shewanella woodyi and Identification of Probable Lead Molecules.

Patil P, Skariyachan S, Mutt E, Kaushik S. Patil P, et al. Among authors: kaushik s. Interdiscip Sci. 2016 Sep;8(3):284-93. doi: 10.1007/s12539-015-0282-9. Epub 2015 Aug 23. Interdiscip Sci. 2016. PMID: 26298583

8

Computational analysis of the domain architecture and substrate-gating mechanism of prolyl oligopeptidases from Shewanella woodyi and identification probable lead molecules.

Patil P, Skariyachan S, Mutt E, Kaushik S. Patil P, et al. Among authors: kaushik s. Interdiscip Sci. 2015 Feb 6. doi: 10.1007/s12539-014-0244-7. Online ahead of print. Interdiscip Sci. 2015. PMID: 25663117

9

Graphene on paper: a simple, low-cost chemical sensing platform.

Kumar S, Kaushik S, Pratap R, Raghavan S. Kumar S, et al. Among authors: kaushik s. ACS Appl Mater Interfaces. 2015 Feb 4;7(4):2189-94. doi: 10.1021/am5084122. Epub 2015 Jan 23. ACS Appl Mater Interfaces. 2015. PMID: 25597697

10

Pitavastatin attenuates cisplatin-induced renal injury by targeting MAPK and apoptotic pathways.

Kaushik S, Tomar A, Puthanmadhom Narayanan S, Nag TC, Arya DS, Bhatia J. Kaushik S, et al. J Pharm Pharmacol. 2019 Jul;71(7):1072-1081. doi: 10.1111/jphp.13090. Epub 2019 Apr 7. J Pharm Pharmacol. 2019. PMID: 30957246

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