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Near-optimal assembly for shotgun sequencing with noisy reads.
BMC Bioinformatics. 2014;15 Suppl 9(Suppl 9):S4. doi: 10.1186/1471-2105-15-S9-S4. Epub 2014 Sep 10.
BMC Bioinformatics. 2014.
PMID: 25252708
Free PMC article.
FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.
Lam KK, LaButti K, Khalak A, Tse D.
Lam KK, et al. Among authors: khalak a.
Bioinformatics. 2015 Oct 1;31(19):3207-9. doi: 10.1093/bioinformatics/btv280. Epub 2015 Jun 3.
Bioinformatics. 2015.
PMID: 26040454
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Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes.
Chin CS, Behera S, Khalak A, Sedlazeck FJ, Sudmant PH, Wagner J, Zook JM.
Chin CS, et al. Among authors: khalak a.
Nat Methods. 2023 Aug;20(8):1213-1221. doi: 10.1038/s41592-023-01914-y. Epub 2023 Jun 26.
Nat Methods. 2023.
PMID: 37365340
Free PMC article.
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