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Proximity-Based Differential Single-Cell Analysis of the Niche to Identify Stem/Progenitor Cell Regulators.
Silberstein L, Goncalves KA, Kharchenko PV, Turcotte R, Kfoury Y, Mercier F, Baryawno N, Severe N, Bachand J, Spencer JA, Papazian A, Lee D, Chitteti BR, Srour EF, Hoggatt J, Tate T, Lo Celso C, Ono N, Nutt S, Heino J, Sipilä K, Shioda T, Osawa M, Lin CP, Hu GF, Scadden DT. Silberstein L, et al. Among authors: kharchenko pv. Cell Stem Cell. 2016 Oct 6;19(4):530-543. doi: 10.1016/j.stem.2016.07.004. Epub 2016 Aug 11. Cell Stem Cell. 2016. PMID: 27524439 Free PMC article.
Gene panel selection for targeted spatial transcriptomics.
Zhang Y, Petukhov V, Biederstedt E, Que R, Zhang K, Kharchenko PV. Zhang Y, et al. Among authors: kharchenko pv. Genome Biol. 2024 Jan 25;25(1):35. doi: 10.1186/s13059-024-03174-1. Genome Biol. 2024. PMID: 38273415 Free PMC article.
Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming.
Apostolou E, Ferrari F, Walsh RM, Bar-Nur O, Stadtfeld M, Cheloufi S, Stuart HT, Polo JM, Ohsumi TK, Borowsky ML, Kharchenko PV, Park PJ, Hochedlinger K. Apostolou E, et al. Among authors: kharchenko pv. Cell Stem Cell. 2013 Jun 6;12(6):699-712. doi: 10.1016/j.stem.2013.04.013. Epub 2013 May 9. Cell Stem Cell. 2013. PMID: 23665121 Free PMC article.
DAZL regulates Tet1 translation in murine embryonic stem cells.
Welling M, Chen HH, Muñoz J, Musheev MU, Kester L, Junker JP, Mischerikow N, Arbab M, Kuijk E, Silberstein L, Kharchenko PV, Geens M, Niehrs C, van de Velde H, van Oudenaarden A, Heck AJ, Geijsen N. Welling M, et al. Among authors: kharchenko pv. EMBO Rep. 2015 Jul;16(7):791-802. doi: 10.15252/embr.201540538. Epub 2015 Jun 15. EMBO Rep. 2015. PMID: 26077710 Free PMC article.
Challenges and emerging directions in single-cell analysis.
Yuan GC, Cai L, Elowitz M, Enver T, Fan G, Guo G, Irizarry R, Kharchenko P, Kim J, Orkin S, Quackenbush J, Saadatpour A, Schroeder T, Shivdasani R, Tirosh I. Yuan GC, et al. Genome Biol. 2017 May 8;18(1):84. doi: 10.1186/s13059-017-1218-y. Genome Biol. 2017. PMID: 28482897 Free PMC article. Review.
117 results