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Bacterial proteins pinpoint a single eukaryotic root.
Derelle R, Torruella G, Klimeš V, Brinkmann H, Kim E, Vlček Č, Lang BF, Eliáš M. Derelle R, et al. Among authors: kim e. Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E693-9. doi: 10.1073/pnas.1420657112. Epub 2015 Feb 2. Proc Natl Acad Sci U S A. 2015. PMID: 25646484 Free PMC article.
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.
Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q. Adl SM, et al. Among authors: kim e. J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691. J Eukaryot Microbiol. 2019. PMID: 30257078 Free PMC article.
One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade.
Blaz J, Galindo LJ, Heiss AA, Kaur H, Torruella G, Yang A, Alexa Thompson L, Filbert A, Warring S, Narechania A, Shiratori T, Ishida KI, Dacks JB, López-García P, Moreira D, Kim E, Eme L. Blaz J, et al. Among authors: kim e. Sci Data. 2023 Sep 9;10(1):603. doi: 10.1038/s41597-023-02488-2. Sci Data. 2023. PMID: 37689692 Free PMC article.
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM. Curtis BA, et al. Among authors: kim e. Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28. Nature. 2012. PMID: 23201678
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