Kim S - Search Results

1

Photoactivatable ribonucleosides mark base-specific RNA-binding sites.

Bae JW, Kim S, Kim VN, Kim JS. Bae JW, et al. Among authors: kim s, kim vn, kim js. Nat Commun. 2021 Oct 15;12(1):6026. doi: 10.1038/s41467-021-26317-5. Nat Commun. 2021. PMID: 34654832 Free PMC article.

2

MS1-Level Proteome Quantification Platform Allowing Maximally Increased Multiplexity for SILAC and In Vitro Chemical Labeling.

Choi Y, Jeong K, Shin S, Lee JW, Lee YS, Kim S, Kim SA, Jung J, Kim KP, Kim VN, Kim JS. Choi Y, et al. Among authors: kim kp, kim s, kim vn, kim js, kim sa. Anal Chem. 2020 Apr 7;92(7):4980-4989. doi: 10.1021/acs.analchem.9b05148. Epub 2020 Mar 24. Anal Chem. 2020. PMID: 32167278

3

Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S. Park J, et al. Among authors: kim s. Nat Methods. 2017 Sep;14(9):909-914. doi: 10.1038/nmeth.4388. Epub 2017 Aug 7. Nat Methods. 2017. PMID: 28783154 Free PMC article.

4

MS-GF+ makes progress towards a universal database search tool for proteomics.

Kim S, Pevzner PA. Kim S, et al. Nat Commun. 2014 Oct 31;5:5277. doi: 10.1038/ncomms6277. Nat Commun. 2014. PMID: 25358478 Free PMC article.

5

Multiplexed Post-Experimental Monoisotopic Mass Refinement (mPE-MMR) to Increase Sensitivity and Accuracy in Peptide Identifications from Tandem Mass Spectra of Cofragmentation.

Madar IH, Ko SI, Kim H, Mun DG, Kim S, Smith RD, Lee SW. Madar IH, et al. Among authors: kim h, kim s. Anal Chem. 2017 Jan 17;89(2):1244-1253. doi: 10.1021/acs.analchem.6b03874. Epub 2016 Dec 22. Anal Chem. 2017. PMID: 27966901 Free PMC article.

6

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S. Park J, et al. Among authors: kim s. Nat Methods. 2018 Jul;15(7):554. doi: 10.1038/s41592-018-0040-0. Nat Methods. 2018. PMID: 29899368 Free PMC article.

7

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data.

Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold R, Smith RD, Noble WS, MacCoss MJ. Ting YS, et al. Among authors: kim s. Mol Cell Proteomics. 2015 Sep;14(9):2301-7. doi: 10.1074/mcp.O114.047035. Epub 2015 Jul 27. Mol Cell Proteomics. 2015. PMID: 26217018 Free PMC article.

8

Strelka2: fast and accurate calling of germline and somatic variants.

Kim S, Scheffler K, Halpern AL, Bekritsky MA, Noh E, Källberg M, Chen X, Kim Y, Beyter D, Krusche P, Saunders CT. Kim S, et al. Among authors: kim y. Nat Methods. 2018 Aug;15(8):591-594. doi: 10.1038/s41592-018-0051-x. Epub 2018 Jul 16. Nat Methods. 2018. PMID: 30013048

9

False discovery rates in spectral identification.

Jeong K, Kim S, Bandeira N. Jeong K, et al. Among authors: kim s. BMC Bioinformatics. 2012;13 Suppl 16(Suppl 16):S2. doi: 10.1186/1471-2105-13-S16-S2. Epub 2012 Nov 5. BMC Bioinformatics. 2012. PMID: 23176207 Free PMC article.

10

LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data.

Kyle JE, Crowell KL, Casey CP, Fujimoto GM, Kim S, Dautel SE, Smith RD, Payne SH, Metz TO. Kyle JE, et al. Among authors: kim s. Bioinformatics. 2017 Jun 1;33(11):1744-1746. doi: 10.1093/bioinformatics/btx046. Bioinformatics. 2017. PMID: 28158427 Free PMC article.

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