Knight R - Search Results

1

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project.

Debelius JW, Vázquez-Baeza Y, McDonald D, Xu Z, Wolfe E, Knight R. Debelius JW, et al. Among authors: knight r. J Microbiol Biol Educ. 2016 Mar 1;17(1):46-50. doi: 10.1128/jmbe.v17i1.1034. eCollection 2016 Mar. J Microbiol Biol Educ. 2016. PMID: 27047589 Free PMC article.

2

Activating and inhibiting connections in biological network dynamics.

McDonald D, Waterbury L, Knight R, Betterton MD. McDonald D, et al. Among authors: knight r. Biol Direct. 2008 Dec 4;3:49. doi: 10.1186/1745-6150-3-49. Biol Direct. 2008. PMID: 19055800 Free PMC article.

3

A framework for human microbiome research.

Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.

4

Collaborative cloud-enabled tools allow rapid, reproducible biological insights.

Ragan-Kelley B, Walters WA, McDonald D, Riley J, Granger BE, Gonzalez A, Knight R, Perez F, Caporaso JG. Ragan-Kelley B, et al. Among authors: knight r. ISME J. 2013 Mar;7(3):461-4. doi: 10.1038/ismej.2012.123. Epub 2012 Oct 25. ISME J. 2013. PMID: 23096404 Free PMC article. No abstract available.

5

From molecules to dynamic biological communities.

McDonald D, Vázquez-Baeza Y, Walters WA, Caporaso JG, Knight R. McDonald D, et al. Among authors: knight r. Biol Philos. 2013 Mar;28(2):241-259. doi: 10.1007/s10539-013-9364-4. Epub 2013 Feb 5. Biol Philos. 2013. PMID: 23483075 Free PMC article.

6

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome.

McDonald D, Clemente JC, Kuczynski J, Rideout JR, Stombaugh J, Wendel D, Wilke A, Huse S, Hufnagle J, Meyer F, Knight R, Caporaso JG. McDonald D, et al. Among authors: knight r. Gigascience. 2012 Jul 12;1(1):7. doi: 10.1186/2047-217X-1-7. Gigascience. 2012. PMID: 23587224 Free PMC article.

7

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Langille MG, et al. Among authors: knight r. Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25. Nat Biotechnol. 2013. PMID: 23975157 Free PMC article.

8

Advancing our understanding of the human microbiome using QIIME.

Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. Navas-Molina JA, et al. Among authors: knight r. Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8. Methods Enzymol. 2013. PMID: 24060131 Free PMC article.

9

EMPeror: a tool for visualizing high-throughput microbial community data.

Vázquez-Baeza Y, Pirrung M, Gonzalez A, Knight R. Vázquez-Baeza Y, et al. Among authors: knight r. Gigascience. 2013 Nov 26;2(1):16. doi: 10.1186/2047-217X-2-16. Gigascience. 2013. PMID: 24280061 Free PMC article.

10

Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings.

Ursell LK, Gunawardana M, Chang S, Mullen M, Moss JA, Herold BC, Keller MJ, McDonald D, González A, Knight R, Baum MM. Ursell LK, et al. Among authors: knight r. Antiviral Res. 2014 Feb;102:87-94. doi: 10.1016/j.antiviral.2013.12.004. Epub 2013 Dec 19. Antiviral Res. 2014. PMID: 24361269 Free PMC article.

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