Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

17 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Mosaic: making biological sense of complex networks.
Zhang C, Hanspers K, Kuchinsky A, Salomonis N, Xu D, Pico AR. Zhang C, et al. Among authors: kuchinsky a. Bioinformatics. 2012 Jul 15;28(14):1943-4. doi: 10.1093/bioinformatics/bts278. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576176 Free PMC article.
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: kuchinsky a. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Cytoscape ESP: simple search of complex biological networks.
Ashkenazi M, Bader GD, Kuchinsky A, Moshelion M, States DJ. Ashkenazi M, et al. Among authors: kuchinsky a. Bioinformatics. 2008 Jun 15;24(12):1465-6. doi: 10.1093/bioinformatics/btn208. Epub 2008 Apr 28. Bioinformatics. 2008. PMID: 18445605 Free PMC article.
enhancedGraphics: a Cytoscape app for enhanced node graphics.
Morris JH, Kuchinsky A, Ferrin TE, Pico AR. Morris JH, et al. Among authors: kuchinsky a. F1000Res. 2014 Jul 1;3:147. doi: 10.12688/f1000research.4460.1. eCollection 2014. F1000Res. 2014. PMID: 25285206 Free PMC article.
GLay: community structure analysis of biological networks.
Su G, Kuchinsky A, Morris JH, States DJ, Meng F. Su G, et al. Among authors: kuchinsky a. Bioinformatics. 2010 Dec 15;26(24):3135-7. doi: 10.1093/bioinformatics/btq596. Bioinformatics. 2010. PMID: 21123224 Free PMC article.
VistaClara: an expression browser plug-in for Cytoscape.
Kincaid R, Kuchinsky A, Creech M. Kincaid R, et al. Among authors: kuchinsky a. Bioinformatics. 2008 Sep 15;24(18):2112-4. doi: 10.1093/bioinformatics/btn368. Epub 2008 Aug 4. Bioinformatics. 2008. PMID: 18678589 Free PMC article.
Exploring biological networks with Cytoscape software.
Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Yeung N, et al. Among authors: kuchinsky a. Curr Protoc Bioinformatics. 2008 Sep;Chapter 8:8.13.1-8.13.20. doi: 10.1002/0471250953.bi0813s23. Curr Protoc Bioinformatics. 2008. PMID: 18819078
Pathway analysis of coronary atherosclerosis.
King JY, Ferrara R, Tabibiazar R, Spin JM, Chen MM, Kuchinsky A, Vailaya A, Kincaid R, Tsalenko A, Deng DX, Connolly A, Zhang P, Yang E, Watt C, Yakhini Z, Ben-Dor A, Adler A, Bruhn L, Tsao P, Quertermous T, Ashley EA. King JY, et al. Among authors: kuchinsky a. Physiol Genomics. 2005 Sep 21;23(1):103-18. doi: 10.1152/physiolgenomics.00101.2005. Epub 2005 Jun 7. Physiol Genomics. 2005. PMID: 15942018 Free article.
17 results