Kumar A - Search Results

1

Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier.

Kumar A, Khade PM, Dorman KS, Jernigan RL. Kumar A, et al. Bioinformatics. 2022 May 13;38(10):2727-2733. doi: 10.1093/bioinformatics/btac159. Bioinformatics. 2022. PMID: 35561187 Free PMC article.

2

Characterizing and Predicting Protein Hinges for Mechanistic Insight.

Khade PM, Kumar A, Jernigan RL. Khade PM, et al. Among authors: kumar a. J Mol Biol. 2020 Jan 17;432(2):508-522. doi: 10.1016/j.jmb.2019.11.018. Epub 2019 Nov 29. J Mol Biol. 2020. PMID: 31786268 Free PMC article.

3

Ligand Binding Introduces Significant Allosteric Shifts in the Locations of Protein Fluctuations.

Kumar A, Jernigan RL. Kumar A, et al. Front Mol Biosci. 2021 Sep 1;8:733148. doi: 10.3389/fmolb.2021.733148. eCollection 2021. Front Mol Biosci. 2021. PMID: 34540902 Free PMC article.

4

hdANM: a new comprehensive dynamics model for protein hinges.

Khade PM, Scaramozzino D, Kumar A, Lacidogna G, Carpinteri A, Jernigan RL. Khade PM, et al. Among authors: kumar a. Biophys J. 2021 Nov 16;120(22):4955-4965. doi: 10.1016/j.bpj.2021.10.017. Epub 2021 Oct 21. Biophys J. 2021. PMID: 34687719 Free PMC article.

5

Using Surface Hydrophobicity Together with Empirical Potentials to Identify Protein-Protein Binding Sites: Application to the Interactions of E-cadherins.

Jernigan RL, Khade P, Kumar A, Kloczkowski A. Jernigan RL, et al. Among authors: kumar a. Methods Mol Biol. 2022;2340:41-50. doi: 10.1007/978-1-0716-1546-1_3. Methods Mol Biol. 2022. PMID: 35167069 Free PMC article.

6

Predicting allosteric pockets in protein biological assemblages.

Kumar A, Kaynak BT, Dorman KS, Doruker P, Jernigan RL. Kumar A, et al. Bioinformatics. 2023 May 4;39(5):btad275. doi: 10.1093/bioinformatics/btad275. Bioinformatics. 2023. PMID: 37115636 Free PMC article.

7

Tubulin CFEOM mutations both inhibit or activate kinesin motor activity.

Luchniak A, Roy PS, Kumar A, Schneider IC, Gelfand VI, Jernigan RL, Gupta ML Jr. Luchniak A, et al. Among authors: kumar a. Mol Biol Cell. 2024 Mar 1;35(3):ar32. doi: 10.1091/mbc.E23-01-0020. Epub 2024 Jan 3. Mol Biol Cell. 2024. PMID: 38170592 Free PMC article.

8

Ectopic overexpression of Eleusine coracana CAX3 confers tolerance to metal and ion stress in yeast and Arabidopsis.

Jamra G, Ghosh S, Singh N, Tripathy MK, Aggarwal A, Singh RDR, Srivastava AK, Kumar A, Pandey GK. Jamra G, et al. Among authors: kumar a. Plant Physiol Biochem. 2024 Apr 21;211:108613. doi: 10.1016/j.plaphy.2024.108613. Online ahead of print. Plant Physiol Biochem. 2024. PMID: 38696868

9

Brain-muscle communication prevents muscle aging by maintaining daily physiology.

Kumar A, Vaca-Dempere M, Mortimer T, Deryagin O, Smith JG, Petrus P, Koronowski KB, Greco CM, Segalés J, Andrés E, Lukesova V, Zinna VM, Welz PS, Serrano AL, Perdiguero E, Sassone-Corsi P, Benitah SA, Muñoz-Cánoves P. Kumar A, et al. Science. 2024 May 3;384(6695):563-572. doi: 10.1126/science.adj8533. Epub 2024 May 2. Science. 2024. PMID: 38696572

10

Utilization of Point-of-Care Ultrasound as an Imaging Modality in the Emergency Department: A Systematic Review and Meta-Analysis.

Popat A, Harikrishnan S, Seby N, Sen U, Patel SK, Mittal L, Patel M, Vundi C, Patel Y, Babita, Kumar A, Nakrani AA, Patel M, Yadav S. Popat A, et al. Among authors: kumar a. Cureus. 2024 Jan 16;16(1):e52371. doi: 10.7759/cureus.52371. eCollection 2024 Jan. Cureus. 2024. PMID: 38694948 Free PMC article. Review.

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