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Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.
Ogura Y, Ooka T, Iguchi A, Toh H, Asadulghani M, Oshima K, Kodama T, Abe H, Nakayama K, Kurokawa K, Tobe T, Hattori M, Hayashi T. Ogura Y, et al. Among authors: kurokawa k. Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17939-44. doi: 10.1073/pnas.0903585106. Epub 2009 Oct 6. Proc Natl Acad Sci U S A. 2009. PMID: 19815525 Free PMC article.
Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning.
Ogura Y, Kurokawa K, Ooka T, Tashiro K, Tobe T, Ohnishi M, Nakayama K, Morimoto T, Terajima J, Watanabe H, Kuhara S, Hayashi T. Ogura Y, et al. Among authors: kurokawa k. DNA Res. 2006 Feb 28;13(1):3-14. doi: 10.1093/dnares/dsi026. Epub 2006 Feb 22. DNA Res. 2006. PMID: 16766508 Free article.
Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes.
Ogura Y, Ooka T, Asadulghani, Terajima J, Nougayrède JP, Kurokawa K, Tashiro K, Tobe T, Nakayama K, Kuhara S, Oswald E, Watanabe H, Hayashi T. Ogura Y, et al. Among authors: kurokawa k. Genome Biol. 2007;8(7):R138. doi: 10.1186/gb-2007-8-7-r138. Genome Biol. 2007. PMID: 17711596 Free PMC article.
Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of whole-genome PCR scanning and fosmid mapping.
Ogura Y, Abe H, Katsura K, Kurokawa K, Asadulghani M, Iguchi A, Ooka T, Nakayama K, Yamashita A, Hattori M, Tobe T, Hayashi T. Ogura Y, et al. Among authors: kurokawa k. J Bacteriol. 2008 Nov;190(21):6948-60. doi: 10.1128/JB.00625-08. Epub 2008 Aug 29. J Bacteriol. 2008. PMID: 18757547 Free PMC article.
Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.
Iguchi A, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K, Dean P, Kenny B, Quail MA, Thurston S, Dougan G, Hayashi T, Parkhill J, Frankel G. Iguchi A, et al. Among authors: kurokawa k. J Bacteriol. 2009 Jan;191(1):347-54. doi: 10.1128/JB.01238-08. Epub 2008 Oct 24. J Bacteriol. 2009. PMID: 18952797 Free PMC article.
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han CG, Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H, Honda T, Sasakawa C, Ogasawara N, Yasunaga T, Kuhara S, Shiba T, Hattori M, Shinagawa H. Hayashi T, et al. Among authors: kurokawa k. DNA Res. 2001 Feb 28;8(1):11-22. doi: 10.1093/dnares/8.1.11. DNA Res. 2001. PMID: 11258796 Free article.
The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny.
Sakaguchi Y, Hayashi T, Kurokawa K, Nakayama K, Oshima K, Fujinaga Y, Ohnishi M, Ohtsubo E, Hattori M, Oguma K. Sakaguchi Y, et al. Among authors: kurokawa k. Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17472-7. doi: 10.1073/pnas.0505503102. Epub 2005 Nov 15. Proc Natl Acad Sci U S A. 2005. PMID: 16287978 Free PMC article.
The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution.
Nakayama K, Yamashita A, Kurokawa K, Morimoto T, Ogawa M, Fukuhara M, Urakami H, Ohnishi M, Uchiyama I, Ogura Y, Ooka T, Oshima K, Tamura A, Hattori M, Hayashi T. Nakayama K, et al. Among authors: kurokawa k. DNA Res. 2008 Aug;15(4):185-99. doi: 10.1093/dnares/dsn011. Epub 2008 May 28. DNA Res. 2008. PMID: 18508905 Free PMC article.
1,513 results