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Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing.
Fang C, Zhong H, Lin Y, Chen B, Han M, Ren H, Lu H, Luber JM, Xia M, Li W, Stein S, Xu X, Zhang W, Drmanac R, Wang J, Yang H, Hammarström L, Kostic AD, Kristiansen K, Li J. Fang C, et al. Among authors: li j, li w. Gigascience. 2018 Mar 1;7(3):1-8. doi: 10.1093/gigascience/gix133. Gigascience. 2018. PMID: 29293960 Free PMC article.
The metagenome of the female upper reproductive tract.
Li F, Chen C, Wei W, Wang Z, Dai J, Hao L, Song L, Zhang X, Zeng L, Du H, Tang H, Liu N, Yang H, Wang J, Madsen L, Brix S, Kristiansen K, Xu X, Li J, Wu R, Jia H. Li F, et al. Among authors: li j. Gigascience. 2018 Oct 1;7(10):giy107. doi: 10.1093/gigascience/giy107. Gigascience. 2018. PMID: 30192933 Free PMC article.
Prophage Hunter: an integrative hunting tool for active prophages.
Song W, Sun HX, Zhang C, Cheng L, Peng Y, Deng Z, Wang D, Wang Y, Hu M, Liu W, Yang H, Shen Y, Li J, You L, Xiao M. Song W, et al. Among authors: li j. Nucleic Acids Res. 2019 Jul 2;47(W1):W74-W80. doi: 10.1093/nar/gkz380. Nucleic Acids Res. 2019. PMID: 31114893 Free PMC article.
Comprehensive characterization of plasma cell-free Echinococcus spp. DNA in echinococcosis patients using ultra-high-throughput sequencing.
Ji J, Li B, Li J, Danzeng W, Li J, Zhao Y, Qiangba G, Zhang Q, Renzhen N, Basang Z, Jia C, Gongsang Q, Ma J, Wang Y, Chen F, Zhou H, Huasang, Yin J, Xie J, Pei N, Cai H, Jiang H, Yang H, Wang J, Asan, Han X, Li J, Chen W, Yang D. Ji J, et al. Among authors: li j, li b. PLoS Negl Trop Dis. 2020 Apr 13;14(4):e0008148. doi: 10.1371/journal.pntd.0008148. eCollection 2020 Apr. PLoS Negl Trop Dis. 2020. PMID: 32282820 Free PMC article.
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples.
Xiao M, Liu X, Ji J, Li M, Li J, Yang L, Sun W, Ren P, Yang G, Zhao J, Liang T, Ren H, Chen T, Zhong H, Song W, Wang Y, Deng Z, Zhao Y, Ou Z, Wang D, Cai J, Cheng X, Feng T, Wu H, Gong Y, Yang H, Wang J, Xu X, Zhu S, Chen F, Zhang Y, Chen W, Li Y, Li J. Xiao M, et al. Among authors: li y, li j, li m. Genome Med. 2020 Jun 30;12(1):57. doi: 10.1186/s13073-020-00751-4. Genome Med. 2020. PMID: 32605661 Free PMC article.
A compromised specific humoral immune response against the SARS-CoV-2 receptor-binding domain is related to viral persistence and periodic shedding in the gastrointestinal tract.
Hu F, Chen F, Ou Z, Fan Q, Tan X, Wang Y, Pan Y, Ke B, Li L, Guan Y, Mo X, Wang J, Wang J, Luo C, Wen X, Li M, Ren P, Ke C, Li J, Lei C, Tang X, Li F. Hu F, et al. Among authors: li f, li j, li m, li l. Cell Mol Immunol. 2020 Nov;17(11):1119-1125. doi: 10.1038/s41423-020-00550-2. Epub 2020 Oct 9. Cell Mol Immunol. 2020. PMID: 33037400 Free PMC article.
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients.
Wang Y, Wang D, Zhang L, Sun W, Zhang Z, Chen W, Zhu A, Huang Y, Xiao F, Yao J, Gan M, Li F, Luo L, Huang X, Zhang Y, Wong SS, Cheng X, Ji J, Ou Z, Xiao M, Li M, Li J, Ren P, Deng Z, Zhong H, Xu X, Song T, Mok CKP, Peiris M, Zhong N, Zhao J, Li Y, Li J, Zhao J. Wang Y, et al. Among authors: li f, li y, li j, li m. Genome Med. 2021 Feb 22;13(1):30. doi: 10.1186/s13073-021-00847-5. Genome Med. 2021. PMID: 33618765 Free PMC article.
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