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Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.
Liebhoff AM, Venkataraman T, Morgenlander WR, Na M, Kula T, Waugh K, Morrison C, Rewers M, Longman R, Round J, Elledge S, Ruczinski I, Langmead B, Larman HB. Liebhoff AM, et al. bioRxiv [Preprint]. 2023 Jul 31:2023.07.30.551179. doi: 10.1101/2023.07.30.551179. bioRxiv. 2023. PMID: 37577562 Free PMC article. Updated. Preprint.
Pathogen detection in RNA-seq data with Pathonoia.
Liebhoff AM, Menden K, Laschtowitz A, Franke A, Schramm C, Bonn S. Liebhoff AM, et al. BMC Bioinformatics. 2023 Feb 17;24(1):53. doi: 10.1186/s12859-023-05144-z. BMC Bioinformatics. 2023. PMID: 36803415 Free PMC article.
Histological activity despite normal ALT and IgG serum levels in patients with autoimmune hepatitis and cirrhosis.
Laschtowitz A, Zachou K, Lygoura V, Pape S, Derben F, Jaeckel E, Oller-Moreno S, Weidemann S, Krech T, Piecha F, Schön G, Liebhoff AM, Al Tarrah M, Heneghan M, Drenth JPH, Dalekos G, Taubert R, Lohse AW, Schramm C. Laschtowitz A, et al. Among authors: liebhoff am. JHEP Rep. 2021 Jun 12;3(4):100321. doi: 10.1016/j.jhepr.2021.100321. eCollection 2021 Aug. JHEP Rep. 2021. PMID: 34381983 Free PMC article.
Interactive gene networks with KNIT.
Magruder DS, Liebhoff AM, Bethune J, Bonn S. Magruder DS, et al. Among authors: liebhoff am. Bioinformatics. 2021 Apr 19;37(2):276-278. doi: 10.1093/bioinformatics/btaa1107. Bioinformatics. 2021. PMID: 33416865
SEAweb: the small RNA Expression Atlas web application.
Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S. Rahman RU, et al. Among authors: liebhoff am. Nucleic Acids Res. 2020 Jan 8;48(D1):D204-D219. doi: 10.1093/nar/gkz869. Nucleic Acids Res. 2020. PMID: 31598718 Free PMC article.