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LIPID MAPS: update to databases and tools for the lipidomics community.
Conroy MJ, Andrews RM, Andrews S, Cockayne L, Dennis EA, Fahy E, Gaud C, Griffiths WJ, Jukes G, Kolchin M, Mendivelso K, Lopez-Clavijo AF, Ready C, Subramaniam S, O'Donnell VB. Conroy MJ, et al. Among authors: lopez clavijo af. Nucleic Acids Res. 2024 Jan 5;52(D1):D1677-D1682. doi: 10.1093/nar/gkad896. Nucleic Acids Res. 2024. PMID: 37855672 Free PMC article.
Guiding the choice of informatics software and tools for lipidomics research applications.
Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Ni Z, et al. Among authors: lopez clavijo af. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. Nat Methods. 2023. PMID: 36543939 Free PMC article. Review.
Neuronal HSF-1 coordinates the propagation of fat desaturation across tissues to enable adaptation to high temperatures in C. elegans.
Chauve L, Hodge F, Murdoch S, Masoudzadeh F, Mann HJ, Lopez-Clavijo AF, Okkenhaug H, West G, Sousa BC, Segonds-Pichon A, Li C, Wingett SW, Kienberger H, Kleigrewe K, de Bono M, Wakelam MJO, Casanueva O. Chauve L, et al. Among authors: lopez clavijo af. PLoS Biol. 2021 Nov 1;19(11):e3001431. doi: 10.1371/journal.pbio.3001431. eCollection 2021 Nov. PLoS Biol. 2021. PMID: 34723964 Free PMC article.
Non-canonical autophagy drives alternative ATG8 conjugation to phosphatidylserine.
Durgan J, Lystad AH, Sloan K, Carlsson SR, Wilson MI, Marcassa E, Ulferts R, Webster J, Lopez-Clavijo AF, Wakelam MJ, Beale R, Simonsen A, Oxley D, Florey O. Durgan J, et al. Among authors: lopez clavijo af. Mol Cell. 2021 May 6;81(9):2031-2040.e8. doi: 10.1016/j.molcel.2021.03.020. Epub 2021 Apr 27. Mol Cell. 2021. PMID: 33909989 Free PMC article.
THP-1 macrophage cholesterol efflux is impaired by palmitoleate through Akt activation.
Marshall JD, Courage ER, Elliott RF, Fitzpatrick MN, Kim AD, Lopez-Clavijo AF, Woolfrey BA, Ouimet M, Wakelam MJO, Brown RJ. Marshall JD, et al. Among authors: lopez clavijo af. PLoS One. 2020 May 21;15(5):e0233180. doi: 10.1371/journal.pone.0233180. eCollection 2020. PLoS One. 2020. PMID: 32437392 Free PMC article.
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