Lu X - Search Results

1

A Novel Bayesian Framework Infers Driver Activation States and Reveals Pathway-Oriented Molecular Subtypes in Head and Neck Cancer.

Liu Z, Cai C, Ma X, Liu J, Chen L, Lui VWY, Cooper GF, Lu X. Liu Z, et al. Among authors: lu x. Cancers (Basel). 2022 Oct 3;14(19):4825. doi: 10.3390/cancers14194825. Cancers (Basel). 2022. PMID: 36230748 Free PMC article.

2

Mapping annotations with textual evidence using an scLDA model.

Jin B, Chen V, Chen L, Lu X. Jin B, et al. Among authors: lu x. AMIA Annu Symp Proc. 2011;2011:834-42. Epub 2011 Oct 22. AMIA Annu Symp Proc. 2011. PMID: 22195141 Free PMC article.

3

Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses.

Montefusco DJ, Chen L, Matmati N, Lu S, Newcomb B, Cooper GF, Hannun YA, Lu X. Montefusco DJ, et al. Among authors: lu x, lu s. Sci Signal. 2013 Oct 29;6(299):rs14. doi: 10.1126/scisignal.2004515. Sci Signal. 2013. PMID: 24170935 Free PMC article.

4

A comparative analysis of methods for predicting clinical outcomes using high-dimensional genomic datasets.

Jiang X, Cai B, Xue D, Lu X, Cooper GF, Neapolitan RE. Jiang X, et al. Among authors: lu x. J Am Med Inform Assoc. 2014 Oct;21(e2):e312-9. doi: 10.1136/amiajnl-2013-002358. Epub 2014 Apr 15. J Am Med Inform Assoc. 2014. PMID: 24737607 Free PMC article.

5

Modeling signal transduction from protein phosphorylation to gene expression.

Cai C, Chen L, Jiang X, Lu X. Cai C, et al. Among authors: lu x. Cancer Inform. 2014 Oct 13;13(Suppl 1):59-67. doi: 10.4137/CIN.S13883. eCollection 2014. Cancer Inform. 2014. PMID: 25392684 Free PMC article. Review.

6

Trans-species learning of cellular signaling systems with bimodal deep belief networks.

Chen L, Cai C, Chen V, Lu X. Chen L, et al. Among authors: lu x. Bioinformatics. 2015 Sep 15;31(18):3008-15. doi: 10.1093/bioinformatics/btv315. Epub 2015 May 20. Bioinformatics. 2015. PMID: 25995230 Free PMC article.

7

The center for causal discovery of biomedical knowledge from big data.

Cooper GF, Bahar I, Becich MJ, Benos PV, Berg J, Espino JU, Glymour C, Jacobson RC, Kienholz M, Lee AV, Lu X, Scheines R; Center for Causal Discovery team. Cooper GF, et al. Among authors: lu x. J Am Med Inform Assoc. 2015 Nov;22(6):1132-6. doi: 10.1093/jamia/ocv059. Epub 2015 Jul 2. J Am Med Inform Assoc. 2015. PMID: 26138794 Free PMC article.

8

Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.

Lu S, Lu KN, Cheng SY, Hu B, Ma X, Nystrom N, Lu X. Lu S, et al. Among authors: lu x, lu kn. PLoS Comput Biol. 2015 Aug 28;11(8):e1004257. doi: 10.1371/journal.pcbi.1004257. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26317392 Free PMC article.

9

Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model.

Chen L, Cai C, Chen V, Lu X. Chen L, et al. Among authors: lu x. BMC Bioinformatics. 2016 Jan 11;17 Suppl 1(Suppl 1):9. doi: 10.1186/s12859-015-0852-1. BMC Bioinformatics. 2016. PMID: 26818848 Free PMC article.

10

Inferring causal molecular networks: empirical assessment through a community-based effort.

Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium; Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S. Hill SM, et al. Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22. Nat Methods. 2016. PMID: 26901648 Free PMC article.

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