Maccoss MJ - Search Results

1

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast.

Skelly DA, Merrihew GE, Riffle M, Connelly CF, Kerr EO, Johansson M, Jaschob D, Graczyk B, Shulman NJ, Wakefield J, Cooper SJ, Fields S, Noble WS, Muller EG, Davis TN, Dunham MJ, Maccoss MJ, Akey JM. Skelly DA, et al. Among authors: maccoss mj. Genome Res. 2013 Sep;23(9):1496-504. doi: 10.1101/gr.155762.113. Epub 2013 May 29. Genome Res. 2013. PMID: 23720455 Free PMC article.

2

Peptide charge state determination for low-resolution tandem mass spectra.

Klammer AA, Wu CC, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: maccoss mj. Proc IEEE Comput Syst Bioinform Conf. 2005:175-85. doi: 10.1109/csb.2005.44. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447975

3

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.

Frewen BE, Merrihew GE, Wu CC, Noble WS, MacCoss MJ. Frewen BE, et al. Among authors: maccoss mj. Anal Chem. 2006 Aug 15;78(16):5678-84. doi: 10.1021/ac060279n. Anal Chem. 2006. PMID: 16906711

4

Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.

Klammer AA, Yi X, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: maccoss mj. Anal Chem. 2007 Aug 15;79(16):6111-8. doi: 10.1021/ac070262k. Epub 2007 Jul 11. Anal Chem. 2007. PMID: 17622186

5

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

Käll L, Canterbury JD, Weston J, Noble WS, MacCoss MJ. Käll L, et al. Among authors: maccoss mj. Nat Methods. 2007 Nov;4(11):923-5. doi: 10.1038/nmeth1113. Epub 2007 Oct 21. Nat Methods. 2007. PMID: 17952086

6

Posterior error probabilities and false discovery rates: two sides of the same coin.

Käll L, Storey JD, MacCoss MJ, Noble WS. Käll L, et al. Among authors: maccoss mj. J Proteome Res. 2008 Jan;7(1):40-4. doi: 10.1021/pr700739d. Epub 2007 Dec 4. J Proteome Res. 2008. PMID: 18052118 Review.

7

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.

Käll L, Storey JD, MacCoss MJ, Noble WS. Käll L, et al. Among authors: maccoss mj. J Proteome Res. 2008 Jan;7(1):29-34. doi: 10.1021/pr700600n. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067246 Review.

8

Rapid and accurate peptide identification from tandem mass spectra.

Park CY, Klammer AA, Käll L, MacCoss MJ, Noble WS. Park CY, et al. Among authors: maccoss mj. J Proteome Res. 2008 Jul;7(7):3022-7. doi: 10.1021/pr800127y. Epub 2008 May 28. J Proteome Res. 2008. PMID: 18505281 Free PMC article.

9

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.

Klammer AA, Reynolds SM, Bilmes JA, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: maccoss mj. Bioinformatics. 2008 Jul 1;24(13):i348-56. doi: 10.1093/bioinformatics/btn189. Bioinformatics. 2008. PMID: 18586734 Free PMC article.

10

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.

Merrihew GE, Davis C, Ewing B, Williams G, Käll L, Frewen BE, Noble WS, Green P, Thomas JH, MacCoss MJ. Merrihew GE, et al. Among authors: maccoss mj. Genome Res. 2008 Oct;18(10):1660-9. doi: 10.1101/gr.077644.108. Epub 2008 Jul 24. Genome Res. 2008. PMID: 18653799 Free PMC article.

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