Marti-Renom MA - Search Results

1

SARA: a server for function annotation of RNA structures.

Capriotti E, Marti-Renom MA. Capriotti E, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W260-5. doi: 10.1093/nar/gkp433. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483098 Free PMC article.

2

RNA structure alignment by a unit-vector approach.

Capriotti E, Marti-Renom MA. Capriotti E, et al. Bioinformatics. 2008 Aug 15;24(16):i112-8. doi: 10.1093/bioinformatics/btn288. Bioinformatics. 2008. PMID: 18689811

3

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.

Capriotti E, Marti-Renom MA. Capriotti E, et al. BMC Bioinformatics. 2010 Jun 15;11:322. doi: 10.1186/1471-2105-11-322. BMC Bioinformatics. 2010. PMID: 20550657 Free PMC article.

4

All-atom knowledge-based potential for RNA structure prediction and assessment.

Capriotti E, Norambuena T, Marti-Renom MA, Melo F. Capriotti E, et al. Bioinformatics. 2011 Apr 15;27(8):1086-93. doi: 10.1093/bioinformatics/btr093. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349865

5

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C. Kemena C, et al. Bioinformatics. 2013 May 1;29(9):1112-9. doi: 10.1093/bioinformatics/btt096. Epub 2013 Feb 28. Bioinformatics. 2013. PMID: 23449094

6

Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans.

Capriotti E, Arbiza L, Casadio R, Dopazo J, Dopazo H, Marti-Renom MA. Capriotti E, et al. Hum Mutat. 2008 Jan;29(1):198-204. doi: 10.1002/humu.20628. Hum Mutat. 2008. PMID: 17935148

7

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Baù D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA. Baù D, et al. Nat Struct Mol Biol. 2011 Jan;18(1):107-14. doi: 10.1038/nsmb.1936. Epub 2010 Dec 5. Nat Struct Mol Biol. 2011. PMID: 21131981 Free PMC article.

8

DBAli tools: mining the protein structure space.

Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. Marti-Renom MA, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. doi: 10.1093/nar/gkm236. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478513 Free PMC article.

9

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A. Marti-Renom MA, et al. BMC Bioinformatics. 2007 May 22;8 Suppl 4(Suppl 4):S4. doi: 10.1186/1471-2105-8-S4-S4. BMC Bioinformatics. 2007. PMID: 17570147 Free PMC article.

10

A kernel for open source drug discovery in tropical diseases.

Ortí L, Carbajo RJ, Pieper U, Eswar N, Maurer SM, Rai AK, Taylor G, Todd MH, Pineda-Lucena A, Sali A, Marti-Renom MA. Ortí L, et al. PLoS Negl Trop Dis. 2009;3(4):e418. doi: 10.1371/journal.pntd.0000418. Epub 2009 Apr 21. PLoS Negl Trop Dis. 2009. PMID: 19381286 Free PMC article.

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