Mathews DH - Search Results

1

LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search.

Huang L, Zhang H, Deng D, Zhao K, Liu K, Hendrix DA, Mathews DH. Huang L, et al. Among authors: mathews dh. Bioinformatics. 2019 Jul 15;35(14):i295-i304. doi: 10.1093/bioinformatics/btz375. Bioinformatics. 2019. PMID: 31510672 Free PMC article.

2

Predicting a set of minimal free energy RNA secondary structures common to two sequences.

Mathews DH. Mathews DH. Bioinformatics. 2005 May 15;21(10):2246-53. doi: 10.1093/bioinformatics/bti349. Epub 2005 Feb 24. Bioinformatics. 2005. PMID: 15731207

3

Revolutions in RNA secondary structure prediction.

Mathews DH. Mathews DH. J Mol Biol. 2006 Jun 9;359(3):526-32. doi: 10.1016/j.jmb.2006.01.067. Epub 2006 Feb 6. J Mol Biol. 2006. PMID: 16500677 Review.

4

Prediction of RNA secondary structure by free energy minimization.

Mathews DH, Turner DH. Mathews DH, et al. Curr Opin Struct Biol. 2006 Jun;16(3):270-8. doi: 10.1016/j.sbi.2006.05.010. Epub 2006 May 19. Curr Opin Struct Biol. 2006. PMID: 16713706 Review.

5

Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign.

Harmanci AO, Sharma G, Mathews DH. Harmanci AO, et al. Among authors: mathews dh. BMC Bioinformatics. 2007 Apr 19;8:130. doi: 10.1186/1471-2105-8-130. BMC Bioinformatics. 2007. PMID: 17445273 Free PMC article.

6

Predicting helical coaxial stacking in RNA multibranch loops.

Tyagi R, Mathews DH. Tyagi R, et al. Among authors: mathews dh. RNA. 2007 Jul;13(7):939-51. doi: 10.1261/rna.305307. Epub 2007 May 16. RNA. 2007. PMID: 17507661 Free PMC article.

7

Efficient parameter estimation for RNA secondary structure prediction.

Andronescu M, Condon A, Hoos HH, Mathews DH, Murphy KP. Andronescu M, et al. Among authors: mathews dh. Bioinformatics. 2007 Jul 1;23(13):i19-28. doi: 10.1093/bioinformatics/btm223. Bioinformatics. 2007. PMID: 17646296

8

PARTS: probabilistic alignment for RNA joinT secondary structure prediction.

Harmanci AO, Sharma G, Mathews DH. Harmanci AO, et al. Among authors: mathews dh. Nucleic Acids Res. 2008 Apr;36(7):2406-17. doi: 10.1093/nar/gkn043. Epub 2008 Feb 26. Nucleic Acids Res. 2008. PMID: 18304945 Free PMC article.

9

RNA secondary structure analysis using RNAstructure.

Mathews DH. Mathews DH. Curr Protoc Bioinformatics. 2006 Mar;Chapter 12:Unit 12.6. doi: 10.1002/0471250953.bi1206s13. Curr Protoc Bioinformatics. 2006. PMID: 18428759 Free PMC article.

10

Use of chemical modification to elucidate RNA folding pathways.

Mathews DH, Turner DH. Mathews DH, et al. Curr Protoc Nucleic Acid Chem. 2002 Aug;Chapter 11:Unit 11.9. doi: 10.1002/0471142700.nc1109s09. Curr Protoc Nucleic Acid Chem. 2002. PMID: 18428887

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