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Heritable individual-specific and allele-specific chromatin signatures in humans.
Science. 2010 Apr 9;328(5975):235-9. doi: 10.1126/science.1184655. Epub 2010 Mar 18.
Science. 2010.
PMID: 20299549
Free PMC article.
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, Lee BK, Sheffield NC, Gräf S, Huss M, Keefe D, Liu Z, London D, McDaniell RM, Shibata Y, Showers KA, Simon JM, Vales T, Wang T, Winter D, Zhang Z, Clarke ND, Birney E, Iyer VR, Crawford GE, Lieb JD, Furey TS.
Song L, et al. Among authors: mcdaniell rm.
Genome Res. 2011 Oct;21(10):1757-67. doi: 10.1101/gr.121541.111. Epub 2011 Jul 12.
Genome Res. 2011.
PMID: 21750106
Free PMC article.
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Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.
Lee BK, Bhinge AA, Battenhouse A, McDaniell RM, Liu Z, Song L, Ni Y, Birney E, Lieb JD, Furey TS, Crawford GE, Iyer VR.
Lee BK, et al. Among authors: mcdaniell rm.
Genome Res. 2012 Jan;22(1):9-24. doi: 10.1101/gr.127597.111. Epub 2011 Nov 16.
Genome Res. 2012.
PMID: 22090374
Free PMC article.
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FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD.
Giresi PG, et al. Among authors: mcdaniell rm.
Genome Res. 2007 Jun;17(6):877-85. doi: 10.1101/gr.5533506. Epub 2006 Dec 19.
Genome Res. 2007.
PMID: 17179217
Free PMC article.
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An integrated encyclopedia of DNA elements in the human genome.
ENCODE Project Consortium.
ENCODE Project Consortium.
Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.
Nature. 2012.
PMID: 22955616
Free PMC article.
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A user's guide to the encyclopedia of DNA elements (ENCODE).
ENCODE Project Consortium.
ENCODE Project Consortium.
PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19.
PLoS Biol. 2011.
PMID: 21526222
Free PMC article.
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NOTCH2 mutations cause Alagille syndrome, a heterogeneous disorder of the notch signaling pathway.
McDaniell R, Warthen DM, Sanchez-Lara PA, Pai A, Krantz ID, Piccoli DA, Spinner NB.
McDaniell R, et al.
Am J Hum Genet. 2006 Jul;79(1):169-73. doi: 10.1086/505332. Epub 2006 May 10.
Am J Hum Genet. 2006.
PMID: 16773578
Free PMC article.
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Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha).
Chambers KE, McDaniell R, Raincrow JD, Deshmukh M, Stadler PF, Chiu CH.
Chambers KE, et al. Among authors: mcdaniell r.
Theory Biosci. 2009 May;128(2):109-20. doi: 10.1007/s12064-009-0056-1. Epub 2009 Feb 19.
Theory Biosci. 2009.
PMID: 19225820
Free PMC article.
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