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Rice SNP-seek database update: new SNPs, indels, and queries.
Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, McNally KL, Alexandrov N. Mansueto L, et al. Among authors: mcnally kl. Nucleic Acids Res. 2017 Jan 4;45(D1):D1075-D1081. doi: 10.1093/nar/gkw1135. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899667 Free PMC article.
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.
McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD, Weigel D, Mackill DJ, Bruskiewich RM, Rätsch G, Buell CR, Leung H, Leach JE. McNally KL, et al. Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12273-8. doi: 10.1073/pnas.0900992106. Epub 2009 Jul 13. Proc Natl Acad Sci U S A. 2009. PMID: 19597147 Free PMC article.
Genetic variation in biomass traits among 20 diverse rice varieties.
Jahn CE, Mckay JK, Mauleon R, Stephens J, McNally KL, Bush DR, Leung H, Leach JE. Jahn CE, et al. Among authors: mcnally kl. Plant Physiol. 2011 Jan;155(1):157-68. doi: 10.1104/pp.110.165654. Epub 2010 Nov 9. Plant Physiol. 2011. PMID: 21062890 Free PMC article.
SNP-Seek database of SNPs derived from 3000 rice genomes.
Alexandrov N, Tai S, Wang W, Mansueto L, Palis K, Fuentes RR, Ulat VJ, Chebotarov D, Zhang G, Li Z, Mauleon R, Hamilton RS, McNally KL. Alexandrov N, et al. Among authors: mcnally kl. Nucleic Acids Res. 2015 Jan;43(Database issue):D1023-7. doi: 10.1093/nar/gku1039. Epub 2014 Nov 27. Nucleic Acids Res. 2015. PMID: 25429973 Free PMC article.
Environmental Response and Genomic Regions Correlated with Rice Root Growth and Yield under Drought in the OryzaSNP Panel across Multiple Study Systems.
Wade LJ, Bartolome V, Mauleon R, Vasant VD, Prabakar SM, Chelliah M, Kameoka E, Nagendra K, Reddy KR, Varma CM, Patil KG, Shrestha R, Al-Shugeairy Z, Al-Ogaidi F, Munasinghe M, Gowda V, Semon M, Suralta RR, Shenoy V, Vadez V, Serraj R, Shashidhar HE, Yamauchi A, Babu RC, Price A, McNally KL, Henry A. Wade LJ, et al. Among authors: mcnally kl. PLoS One. 2015 Apr 24;10(4):e0124127. doi: 10.1371/journal.pone.0124127. eCollection 2015. PLoS One. 2015. PMID: 25909711 Free PMC article.
Allele mining and enhanced genetic recombination for rice breeding.
Leung H, Raghavan C, Zhou B, Oliva R, Choi IR, Lacorte V, Jubay ML, Cruz CV, Gregorio G, Singh RK, Ulat VJ, Borja FN, Mauleon R, Alexandrov NN, McNally KL, Sackville Hamilton R. Leung H, et al. Among authors: mcnally kl. Rice (N Y). 2015 Dec;8(1):34. doi: 10.1186/s12284-015-0069-y. Epub 2015 Nov 25. Rice (N Y). 2015. PMID: 26606925 Free PMC article.
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.
Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA. Stein JC, et al. Among authors: mcnally kl. Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22. Nat Genet. 2018. PMID: 29358651
94 results