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Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.
Meehan CJ, Goig GA, Kohl TA, Verboven L, Dippenaar A, Ezewudo M, Farhat MR, Guthrie JL, Laukens K, Miotto P, Ofori-Anyinam B, Dreyer V, Supply P, Suresh A, Utpatel C, van Soolingen D, Zhou Y, Ashton PM, Brites D, Cabibbe AM, de Jong BC, de Vos M, Menardo F, Gagneux S, Gao Q, Heupink TH, Liu Q, Loiseau C, Rigouts L, Rodwell TC, Tagliani E, Walker TM, Warren RM, Zhao Y, Zignol M, Schito M, Gardy J, Cirillo DM, Niemann S, Comas I, Van Rie A. Meehan CJ, et al. Nat Rev Microbiol. 2019 Sep;17(9):533-545. doi: 10.1038/s41579-019-0214-5. Nat Rev Microbiol. 2019. PMID: 31209399 Review.
GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions.
Farhat MR, Freschi L, Calderon R, Ioerger T, Snyder M, Meehan CJ, de Jong B, Rigouts L, Sloutsky A, Kaur D, Sunyaev S, van Soolingen D, Shendure J, Sacchettini J, Murray M. Farhat MR, et al. Among authors: meehan cj. Nat Commun. 2019 May 13;10(1):2128. doi: 10.1038/s41467-019-10110-6. Nat Commun. 2019. PMID: 31086182 Free PMC article.
The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia.
Gröschel MI, Meehan CJ, Barilar I, Diricks M, Gonzaga A, Steglich M, Conchillo-Solé O, Scherer IC, Mamat U, Luz CF, De Bruyne K, Utpatel C, Yero D, Gibert I, Daura X, Kampmeier S, Rahman NA, Kresken M, van der Werf TS, Alio I, Streit WR, Zhou K, Schwartz T, Rossen JWA, Farhat MR, Schaible UE, Nübel U, Rupp J, Steinmann J, Niemann S, Kohl TA. Gröschel MI, et al. Among authors: meehan cj. Nat Commun. 2020 Apr 27;11(1):2044. doi: 10.1038/s41467-020-15123-0. Nat Commun. 2020. PMID: 32341346 Free PMC article.
Enhancing genomics and bioinformatics access in Africa: an imperative leap.
Aruhomukama D, Galiwango R, Meehan CJ, Asiimwe B. Aruhomukama D, et al. Among authors: meehan cj. Lancet Microbe. 2024 May;5(5):e410-e411. doi: 10.1016/S2666-5247(23)00408-1. Epub 2024 Jan 25. Lancet Microbe. 2024. PMID: 38281497 Free article. No abstract available.
The population genetics of prokaryotic pangenomes.
Domingo-Sananes MR, Meehan CJ. Domingo-Sananes MR, et al. Among authors: meehan cj. Nat Ecol Evol. 2024 Feb;8(2):190-191. doi: 10.1038/s41559-023-02276-6. Nat Ecol Evol. 2024. PMID: 38177691 No abstract available.
Genomic transmission clusters and circulating lineages of Mycobacterium tuberculosis among refugees residing in refugee camps in Ethiopia.
Meaza A, Riviere E, Bonsa Z, Rennie V, Gebremicael G, de Diego-Fuertes M, Meehan CJ, Medhin G, Abebe G, Ameni G, Van Rie A, Gumi B. Meaza A, et al. Among authors: meehan cj. Infect Genet Evol. 2023 Dec;116:105530. doi: 10.1016/j.meegid.2023.105530. Epub 2023 Nov 25. Infect Genet Evol. 2023. PMID: 38008242 Free article.
93 results