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Benchmarking multi-rate codon models.
Delport W, Scheffler K, Gravenor MB, Muse SV, Kosakovsky Pond S. Delport W, et al. Among authors: muse sv. PLoS One. 2010 Jul 21;5(7):e11587. doi: 10.1371/journal.pone.0011587. PLoS One. 2010. PMID: 20657773 Free PMC article.
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV. Kosakovsky Pond SL, et al. Among authors: muse sv. Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197. Mol Biol Evol. 2020. PMID: 31504749 Free PMC article.
HyPhy: hypothesis testing using phylogenies.
Pond SL, Frost SD, Muse SV. Pond SL, et al. Among authors: muse sv. Bioinformatics. 2005 Mar 1;21(5):676-9. doi: 10.1093/bioinformatics/bti079. Epub 2004 Oct 27. Bioinformatics. 2005. PMID: 15509596
Evolution of duplicated alpha-tubulin genes in ciliates.
Israel RL, Kosakovsky Pond SL, Muse SV, Katz LA. Israel RL, et al. Among authors: muse sv. Evolution. 2002 Jun;56(6):1110-22. doi: 10.1111/j.0014-3820.2002.tb01425.x. Evolution. 2002. PMID: 12144013
36 results