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Combining Force Fields and Neural Networks for an Accurate Representation of Chemically Diverse Molecular Interactions.
Illarionov A, Sakipov S, Pereyaslavets L, Kurnikov IV, Kamath G, Butin O, Voronina E, Ivahnenko I, Leontyev I, Nawrocki G, Darkhovskiy M, Olevanov M, Cherniavskyi YK, Lock C, Greenslade S, Sankaranarayanan SK, Kurnikova MG, Potoff J, Kornberg RD, Levitt M, Fain B. Illarionov A, et al. Among authors: nawrocki g. J Am Chem Soc. 2023 Nov 1;145(43):23620-23629. doi: 10.1021/jacs.3c07628. Epub 2023 Oct 19. J Am Chem Soc. 2023. PMID: 37856313 Free PMC article.
Protein-Ligand Binding Free-Energy Calculations with ARROW─A Purely First-Principles Parameterized Polarizable Force Field.
Nawrocki G, Leontyev I, Sakipov S, Darkhovskiy M, Kurnikov I, Pereyaslavets L, Kamath G, Voronina E, Butin O, Illarionov A, Olevanov M, Kostikov A, Ivahnenko I, Patel DS, Sankaranarayanan SKRS, Kurnikova MG, Lock C, Crooks GE, Levitt M, Kornberg RD, Fain B. Nawrocki G, et al. J Chem Theory Comput. 2022 Dec 13;18(12):7751-7763. doi: 10.1021/acs.jctc.2c00930. Epub 2022 Dec 2. J Chem Theory Comput. 2022. PMID: 36459593 Free PMC article.
Combining Force Fields and Neural Networks for an Accurate Representation of Bonded Interactions.
Kamath G, Illarionov A, Sakipov S, Pereyaslavets L, Kurnikov IV, Butin O, Voronina E, Ivahnenko I, Leontyev I, Nawrocki G, Darkhovskiy M, Olevanov M, Cherniavskyi YK, Lock C, Greenslade S, Chen Y, Kornberg RD, Levitt M, Fain B. Kamath G, et al. Among authors: nawrocki g. J Phys Chem A. 2024 Feb 1;128(4):807-812. doi: 10.1021/acs.jpca.3c07598. Epub 2024 Jan 17. J Phys Chem A. 2024. PMID: 38232765 Free PMC article.
Neural Network Corrections to Intermolecular Interaction Terms of a Molecular Force Field Capture Nuclear Quantum Effects in Calculations of Liquid Thermodynamic Properties.
Kurnikov IV, Pereyaslavets L, Kamath G, Sakipov SN, Voronina E, Butin O, Illarionov A, Leontyev I, Nawrocki G, Darkhovskiy M, Olevanov M, Ivahnenko I, Chen Y, Lock CB, Levitt M, Kornberg RD, Fain B. Kurnikov IV, et al. Among authors: nawrocki g. J Chem Theory Comput. 2024 Feb 13;20(3):1347-1357. doi: 10.1021/acs.jctc.3c00921. Epub 2024 Jan 19. J Chem Theory Comput. 2024. PMID: 38240485 Free PMC article.
Accurate determination of solvation free energies of neutral organic compounds from first principles.
Pereyaslavets L, Kamath G, Butin O, Illarionov A, Olevanov M, Kurnikov I, Sakipov S, Leontyev I, Voronina E, Gannon T, Nawrocki G, Darkhovskiy M, Ivahnenko I, Kostikov A, Scaranto J, Kurnikova MG, Banik S, Chan H, Sternberg MG, Sankaranarayanan SKRS, Crawford B, Potoff J, Levitt M, Kornberg RD, Fain B. Pereyaslavets L, et al. Among authors: nawrocki g. Nat Commun. 2022 Jan 20;13(1):414. doi: 10.1038/s41467-022-28041-0. Nat Commun. 2022. PMID: 35058472 Free PMC article.
Reduced efficacy of a Src kinase inhibitor in crowded protein solution.
Kasahara K, Re S, Nawrocki G, Oshima H, Mishima-Tsumagari C, Miyata-Yabuki Y, Kukimoto-Niino M, Yu I, Shirouzu M, Feig M, Sugita Y. Kasahara K, et al. Among authors: nawrocki g. Nat Commun. 2021 Jul 2;12(1):4099. doi: 10.1038/s41467-021-24349-5. Nat Commun. 2021. PMID: 34215742 Free PMC article.
Neoadjuvant chemotherapy with or without oxaliplatin after short-course radiotherapy in high-risk rectal cancer: A subgroup analysis from a prospective study.
Kosakowska E, Pietrzak L, Michalski W, Kepka L, Polkowski W, Jankiewicz M, Cisel B, Krynski J, Zwolinski J, Wyrwicz L, Rutkowski A, Stylinski R, Nawrocki G, Sopylo R, Szczepkowski M, Tarnowski W, Bujko K; Polish Colorectal Study Group. Kosakowska E, et al. Among authors: nawrocki g. Rep Pract Oncol Radiother. 2020 Nov-Dec;25(6):1017-1022. doi: 10.1016/j.rpor.2020.08.002. Epub 2020 Aug 16. Rep Pract Oncol Radiother. 2020. PMID: 33390858 Free PMC article.
35 results