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A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory.
PLoS Comput Biol. 2019 Mar 11;15(3):e1006794. doi: 10.1371/journal.pcbi.1006794. eCollection 2019 Mar.
PLoS Comput Biol. 2019.
PMID: 30856174
Free PMC article.
Determination of in vivo RNA kinetics using RATE-seq.
Neymotin B, Athanasiadou R, Gresham D.
Neymotin B, et al.
RNA. 2014 Oct;20(10):1645-52. doi: 10.1261/rna.045104.114. Epub 2014 Aug 26.
RNA. 2014.
PMID: 25161313
Free PMC article.
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Steady-state and dynamic gene expression programs in Saccharomyces cerevisiae in response to variation in environmental nitrogen.
Airoldi EM, Miller D, Athanasiadou R, Brandt N, Abdul-Rahman F, Neymotin B, Hashimoto T, Bahmani T, Gresham D.
Airoldi EM, et al. Among authors: neymotin b.
Mol Biol Cell. 2016 Apr 15;27(8):1383-96. doi: 10.1091/mbc.E14-05-1013. Epub 2016 Mar 3.
Mol Biol Cell. 2016.
PMID: 26941329
Free PMC article.
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Multiple Transcript Properties Related to Translation Affect mRNA Degradation Rates in Saccharomyces cerevisiae.
Neymotin B, Ettorre V, Gresham D.
Neymotin B, et al.
G3 (Bethesda). 2016 Nov 8;6(11):3475-3483. doi: 10.1534/g3.116.032276.
G3 (Bethesda). 2016.
PMID: 27633789
Free PMC article.
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"Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM.
Doidy J, et al. Among authors: neymotin b.
BMC Genomics. 2016 Feb 3;17:92. doi: 10.1186/s12864-016-2410-2.
BMC Genomics. 2016.
PMID: 26843062
Free PMC article.
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