O'Brien JJ - Search Results

1

Conditional Fragment Ion Probabilities Improve Database Searching for Nonmonoisotopic Precursors.

O'Brien JJ, Gadzuk-Shea M, Seitzer PM, Rad R, McAllister FE, Schweppe DK. O'Brien JJ, et al. J Proteome Res. 2023 Feb 3;22(2):334-342. doi: 10.1021/acs.jproteome.2c00247. Epub 2022 Nov 22. J Proteome Res. 2023. PMID: 36414539 Free PMC article.

2

eIF2B activator prevents neurological defects caused by a chronic integrated stress response.

Wong YL, LeBon L, Basso AM, Kohlhaas KL, Nikkel AL, Robb HM, Donnelly-Roberts DL, Prakash J, Swensen AM, Rubinstein ND, Krishnan S, McAllister FE, Haste NV, O'Brien JJ, Roy M, Ireland A, Frost JM, Shi L, Riedmaier S, Martin K, Dart MJ, Sidrauski C. Wong YL, et al. Elife. 2019 Jan 9;8:e42940. doi: 10.7554/eLife.42940. Elife. 2019. PMID: 30624206 Free PMC article.

3

Systematic identification of cancer cell vulnerabilities to natural killer cell-mediated immune surveillance.

Pech MF, Fong LE, Villalta JE, Chan LJ, Kharbanda S, O'Brien JJ, McAllister FE, Firestone AJ, Jan CH, Settleman J. Pech MF, et al. Elife. 2019 Aug 27;8:e47362. doi: 10.7554/eLife.47362. Elife. 2019. PMID: 31452512 Free PMC article.

4

Automated 16-Plex Plasma Proteomics with Real-Time Search and Ion Mobility Mass Spectrometry Enables Large-Scale Profiling in Naked Mole-Rats and Mice.

Gaun A, Lewis Hardell KN, Olsson N, O'Brien JJ, Gollapudi S, Smith M, McAlister G, Huguet R, Keyser R, Buffenstein R, McAllister FE. Gaun A, et al. J Proteome Res. 2021 Feb 5;20(2):1280-1295. doi: 10.1021/acs.jproteome.0c00681. Epub 2021 Jan 26. J Proteome Res. 2021. PMID: 33499602 Free article.

5

Insights into the Molecular Basis of Genome Stability and Pristine Proteostasis in Naked Mole-Rats.

Narayan V, McMahon M, O'Brien JJ, McAllister F, Buffenstein R. Narayan V, et al. Among authors: o brien jj. Adv Exp Med Biol. 2021;1319:287-314. doi: 10.1007/978-3-030-65943-1_11. Adv Exp Med Biol. 2021. PMID: 34424521

6

Novel insights from a multiomics dissection of the Hayflick limit.

Chan M, Yuan H, Soifer I, Maile TM, Wang RY, Ireland A, O'Brien JJ, Goudeau J, Chan LJG, Vijay T, Freund A, Kenyon C, Bennett BD, McAllister FE, Kelley DR, Roy M, Cohen RL, Levinson AD, Botstein D, Hendrickson DG. Chan M, et al. Among authors: o brien jj. Elife. 2022 Feb 4;11:e70283. doi: 10.7554/eLife.70283. Elife. 2022. PMID: 35119359 Free PMC article.

7

Triple-threat quantitative multiplexed plasma proteomics analysis on immune complex disease MRL-lpr mice.

Gaun A, Preciado López M, Olsson N, Wang JCK, Chan LJG, O'Brien J, Li W, Zavala-Solorio J, Zhang C, Eaton D, McAllister FE. Gaun A, et al. Proteomics. 2022 Oct;22(19-20):e2100242. doi: 10.1002/pmic.202100242. Epub 2022 Sep 1. Proteomics. 2022. PMID: 35964289

8

A data analysis framework for combining multiple batches increases the power of isobaric proteomics experiments.

O'Brien JJ, Raj A, Gaun A, Waite A, Li W, Hendrickson DG, Olsson N, McAllister FE. O'Brien JJ, et al. Nat Methods. 2024 Feb;21(2):290-300. doi: 10.1038/s41592-023-02120-6. Epub 2023 Dec 18. Nat Methods. 2024. PMID: 38110636

9

Improved Method for Determining Absolute Phosphorylation Stoichiometry Using Bayesian Statistics and Isobaric Labeling.

Lim MY, O'Brien J, Paulo JA, Gygi SP. Lim MY, et al. J Proteome Res. 2017 Nov 3;16(11):4217-4226. doi: 10.1021/acs.jproteome.7b00571. J Proteome Res. 2017. PMID: 28985074 Free PMC article.

10

Compositional Proteomics: Effects of Spatial Constraints on Protein Quantification Utilizing Isobaric Tags.

O'Brien JJ, O'Connell JD, Paulo JA, Thakurta S, Rose CM, Weekes MP, Huttlin EL, Gygi SP. O'Brien JJ, et al. J Proteome Res. 2018 Jan 5;17(1):590-599. doi: 10.1021/acs.jproteome.7b00699. Epub 2017 Dec 15. J Proteome Res. 2018. PMID: 29195270 Free PMC article.

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