Omar SI - Search Results

1

Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers.

Omar SI, Zhao M, Sekar RV, Moghadam SA, Tuszynski JA, Woodside MT. Omar SI, et al. PLoS Comput Biol. 2021 Jan 19;17(1):e1008603. doi: 10.1371/journal.pcbi.1008603. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33465066 Free PMC article.

2

The molecular mechanism of action of methylene quinuclidinone and its effects on the structure of p53 mutants.

Omar SI, Tuszynski J. Omar SI, et al. Oncotarget. 2018 Dec 14;9(98):37137-37156. doi: 10.18632/oncotarget.26440. eCollection 2018 Dec 14. Oncotarget. 2018. PMID: 30647850 Free PMC article.

3

Ranking the Binding Energies of p53 Mutant Activators and Their ADMET Properties.

Omar SI, Tuszynski J. Omar SI, et al. Chem Biol Drug Des. 2015 Aug;86(2):163-72. doi: 10.1111/cbdd.12480. Epub 2014 Dec 11. Chem Biol Drug Des. 2015. PMID: 25407396

4

Mathematical and computational modeling in biology at multiple scales.

Tuszynski JA, Winter P, White D, Tseng CY, Sahu KK, Gentile F, Spasevska I, Omar SI, Nayebi N, Churchill CD, Klobukowski M, El-Magd RM. Tuszynski JA, et al. Among authors: omar si. Theor Biol Med Model. 2014 Dec 27;11:52. doi: 10.1186/1742-4682-11-52. Theor Biol Med Model. 2014. PMID: 25542608 Free PMC article. Review.

5

A computational method for selecting short peptide sequences for inorganic material binding.

Nayebi N, Cetinel S, Omar SI, Tuszynski JA, Montemagno C. Nayebi N, et al. Among authors: omar si. Proteins. 2017 Nov;85(11):2024-2035. doi: 10.1002/prot.25356. Epub 2017 Aug 8. Proteins. 2017. PMID: 28734030

6

Insights into the Effect of the G245S Single Point Mutation on the Structure of p53 and the Binding of the Protein to DNA.

Lepre MG, Omar SI, Grasso G, Morbiducci U, Deriu MA, Tuszynski JA. Lepre MG, et al. Among authors: omar si. Molecules. 2017 Aug 16;22(8):1358. doi: 10.3390/molecules22081358. Molecules. 2017. PMID: 28813011 Free PMC article.

7

Virtual screening using covalent docking to find activators for G245S mutant p53.

Omar SI, Lepre MG, Morbiducci U, Deriu MA, Tuszynski JA. Omar SI, et al. PLoS One. 2018 Sep 7;13(9):e0200769. doi: 10.1371/journal.pone.0200769. eCollection 2018. PLoS One. 2018. PMID: 30192754 Free PMC article.

8

GLUT1 and TUBB4 in Glioblastoma Could be Efficacious Targets.

Guda MR, Labak CM, Omar SI, Asuthkar S, Airala S, Tuszynski J, Tsung AJ, Velpula KK. Guda MR, et al. Among authors: omar si. Cancers (Basel). 2019 Sep 5;11(9):1308. doi: 10.3390/cancers11091308. Cancers (Basel). 2019. PMID: 31491891 Free PMC article.

9

Algebraic and topological indices of molecular pathway networks in human cancers.

Hinow P, Rietman EA, Omar SI, Tuszyński JA. Hinow P, et al. Among authors: omar si. Math Biosci Eng. 2015 Dec;12(6):1289-302. doi: 10.3934/mbe.2015.12.1289. Math Biosci Eng. 2015. PMID: 26775864 Free article.

10

Protein Structural Analysis of Calbindin D28k Function and Dysregulation: Potential Competition Between Ca(2+) and Zn(2.).

Omar SI, Albensi BC, Gough KM. Omar SI, et al. Curr Alzheimer Res. 2016;13(7):777-86. doi: 10.2174/1567205013666160310144100. Curr Alzheimer Res. 2016. PMID: 26961742

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