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BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows.
Rubens U, Mormont R, Paavolainen L, Bäcker V, Pavie B, Scholz LA, Michiels G, Maška M, Ünay D, Ball G, Hoyoux R, Vandaele R, Golani O, Stanciu SG, Sladoje N, Paul-Gilloteaux P, Marée R, Tosi S. Rubens U, et al. Among authors: paavolainen l. Patterns (N Y). 2020 Jun 3;1(3):100040. doi: 10.1016/j.patter.2020.100040. eCollection 2020 Jun 12. Patterns (N Y). 2020. PMID: 33205108 Free PMC article.
Comprehensive Drug Testing of Patient-derived Conditionally Reprogrammed Cells from Castration-resistant Prostate Cancer.
Saeed K, Rahkama V, Eldfors S, Bychkov D, Mpindi JP, Yadav B, Paavolainen L, Aittokallio T, Heckman C, Wennerberg K, Peehl DM, Horvath P, Mirtti T, Rannikko A, Kallioniemi O, Östling P, Af Hällström TM. Saeed K, et al. Among authors: paavolainen l. Eur Urol. 2017 Mar;71(3):319-327. doi: 10.1016/j.eururo.2016.04.019. Epub 2016 May 6. Eur Urol. 2017. PMID: 27160946 Free article.
Data-analysis strategies for image-based cell profiling.
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE. Caicedo JC, et al. Among authors: paavolainen l. Nat Methods. 2017 Aug 31;14(9):849-863. doi: 10.1038/nmeth.4397. Nat Methods. 2017. PMID: 28858338 Free PMC article.
Intelligent image-based in situ single-cell isolation.
Brasko C, Smith K, Molnar C, Farago N, Hegedus L, Balind A, Balassa T, Szkalisity A, Sukosd F, Kocsis K, Balint B, Paavolainen L, Enyedi MZ, Nagy I, Puskas LG, Haracska L, Tamas G, Horvath P. Brasko C, et al. Among authors: paavolainen l. Nat Commun. 2018 Jan 15;9(1):226. doi: 10.1038/s41467-017-02628-4. Nat Commun. 2018. PMID: 29335532 Free PMC article.
Prognostic Role of Tumor Immune Microenvironment in Pleural Epithelioid Mesothelioma.
Ollila H, Mäyränpää MI, Paavolainen L, Paajanen J, Välimäki K, Sutinen E, Wolff H, Räsänen J, Kallioniemi O, Myllärniemi M, Ilonen I, Pellinen T. Ollila H, et al. Among authors: paavolainen l. Front Oncol. 2022 Jun 20;12:870352. doi: 10.3389/fonc.2022.870352. eCollection 2022. Front Oncol. 2022. PMID: 35795056 Free PMC article.
Fibroblast subsets in non-small cell lung cancer: Associations with survival, mutations, and immune features.
Pellinen T, Paavolainen L, Martín-Bernabé A, Papatella Araujo R, Strell C, Mezheyeuski A, Backman M, La Fleur L, Brück O, Sjölund J, Holmberg E, Välimäki K, Brunnström H, Botling J, Moreno-Ruiz P, Kallioniemi O, Micke P, Östman A. Pellinen T, et al. Among authors: paavolainen l. J Natl Cancer Inst. 2023 Jan 10;115(1):71-82. doi: 10.1093/jnci/djac178. J Natl Cancer Inst. 2023. PMID: 36083003
44 results