Palin K - Search Results

1

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity.

Hallikas O, Palin K, Sinjushina N, Rautiainen R, Partanen J, Ukkonen E, Taipale J. Hallikas O, et al. Among authors: palin k. Cell. 2006 Jan 13;124(1):47-59. doi: 10.1016/j.cell.2005.10.042. Cell. 2006. PMID: 16413481 Free article.

2

Evidence of a causal effect of genetic tendency to gain muscle mass on uterine leiomyomata.

Sliz E, Tyrmi JS, Rahmioglu N, Zondervan KT, Becker CM; FinnGen; Uimari O, Kettunen J. Sliz E, et al. Nat Commun. 2023 Feb 1;14(1):542. doi: 10.1038/s41467-023-35974-7. Nat Commun. 2023. PMID: 36726022 Free PMC article.

3

Correlating gene promoters and expression in gene disruption experiments.

Palin K, Ukkonen E, Brazma A, Vilo J. Palin K, et al. Bioinformatics. 2002;18 Suppl 2:S172-80. doi: 10.1093/bioinformatics/18.suppl_2.s172. Bioinformatics. 2002. PMID: 12386000

4

From gene networks to gene function.

Schlitt T, Palin K, Rung J, Dietmann S, Lappe M, Ukkonen E, Brazma A. Schlitt T, et al. Among authors: palin k. Genome Res. 2003 Dec;13(12):2568-76. doi: 10.1101/gr.1111403. Genome Res. 2003. PMID: 14656964 Free PMC article.

5

Locating potential enhancer elements by comparative genomics using the EEL software.

Palin K, Taipale J, Ukkonen E. Palin K, et al. Nat Protoc. 2006;1(1):368-74. doi: 10.1038/nprot.2006.56. Nat Protoc. 2006. PMID: 17406258

6

Integrating sequence, evolution and functional genomics in regulatory genomics.

Vingron M, Brazma A, Coulson R, van Helden J, Manke T, Palin K, Sand O, Ukkonen E. Vingron M, et al. Among authors: palin k. Genome Biol. 2009;10(1):202. doi: 10.1186/gb-2009-10-1-202. Epub 2009 Jan 30. Genome Biol. 2009. PMID: 19226437 Free PMC article. Review.

7

The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling.

Tuupanen S, Turunen M, Lehtonen R, Hallikas O, Vanharanta S, Kivioja T, Björklund M, Wei G, Yan J, Niittymäki I, Mecklin JP, Järvinen H, Ristimäki A, Di-Bernardo M, East P, Carvajal-Carmona L, Houlston RS, Tomlinson I, Palin K, Ukkonen E, Karhu A, Taipale J, Aaltonen LA. Tuupanen S, et al. Among authors: palin k. Nat Genet. 2009 Aug;41(8):885-90. doi: 10.1038/ng.406. Epub 2009 Jun 28. Nat Genet. 2009. PMID: 19561604

8

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.

Jolma A, Kivioja T, Toivonen J, Cheng L, Wei G, Enge M, Taipale M, Vaquerizas JM, Yan J, Sillanpää MJ, Bonke M, Palin K, Talukder S, Hughes TR, Luscombe NM, Ukkonen E, Taipale J. Jolma A, et al. Among authors: palin k. Genome Res. 2010 Jun;20(6):861-73. doi: 10.1101/gr.100552.109. Epub 2010 Apr 8. Genome Res. 2010. PMID: 20378718 Free PMC article.

9

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo.

Wei GH, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Wei GH, et al. Among authors: palin k. EMBO J. 2010 Jul 7;29(13):2147-60. doi: 10.1038/emboj.2010.106. Epub 2010 Jun 1. EMBO J. 2010. PMID: 20517297 Free PMC article.

10

DNA-binding specificities of human transcription factors.

Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. Jolma A, et al. Among authors: palin k. Cell. 2013 Jan 17;152(1-2):327-39. doi: 10.1016/j.cell.2012.12.009. Cell. 2013. PMID: 23332764 Free article.

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