Park SJ - Search Results

1

Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility.

Ishii S, Kakizuka T, Park SJ, Tagawa A, Sanbo C, Tanabe H, Ohkawa Y, Nakanishi M, Nakai K, Miyanari Y. Ishii S, et al. Among authors: park sj. Nat Genet. 2024 Mar;56(3):473-482. doi: 10.1038/s41588-024-01658-1. Epub 2024 Feb 15. Nat Genet. 2024. PMID: 38361031

2

A regression analysis of gene expression in ES cells reveals two gene classes that are significantly different in epigenetic patterns.

Park SJ, Nakai K. Park SJ, et al. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S50. doi: 10.1186/1471-2105-12-S1-S50. BMC Bioinformatics. 2011. PMID: 21342583 Free PMC article.

3

Predicting promoter activities of primary human DNA sequences.

Irie T, Park SJ, Yamashita R, Seki M, Yada T, Sugano S, Nakai K, Suzuki Y. Irie T, et al. Among authors: park sj. Nucleic Acids Res. 2011 Jun;39(11):e75. doi: 10.1093/nar/gkr173. Epub 2011 Apr 12. Nucleic Acids Res. 2011. PMID: 21486745 Free PMC article.

4

Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis.

Park SJ, Komata M, Inoue F, Yamada K, Nakai K, Ohsugi M, Shirahige K. Park SJ, et al. Genes Dev. 2013 Dec 15;27(24):2736-48. doi: 10.1101/gad.227926.113. Genes Dev. 2013. PMID: 24352427 Free PMC article.

5

Computational promoter modeling identifies the modes of transcriptional regulation in hematopoietic stem cells.

Park SJ, Umemoto T, Saito-Adachi M, Shiratsuchi Y, Yamato M, Nakai K. Park SJ, et al. PLoS One. 2014 Apr 7;9(4):e93853. doi: 10.1371/journal.pone.0093853. eCollection 2014. PLoS One. 2014. PMID: 24710559 Free PMC article.

6

DBTMEE: a database of transcriptome in mouse early embryos.

Park SJ, Shirahige K, Ohsugi M, Nakai K. Park SJ, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D771-6. doi: 10.1093/nar/gku1001. Epub 2014 Oct 21. Nucleic Acids Res. 2015. PMID: 25336621 Free PMC article.

7

OpenTein: a database of digital whole-slide images of stem cell-derived teratomas.

Park SJ, Komiyama Y, Suemori H, Umezawa A, Nakai K. Park SJ, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D1000-4. doi: 10.1093/nar/gkv1096. Epub 2015 Oct 22. Nucleic Acids Res. 2016. PMID: 26496950 Free PMC article.

8

PAX6 Isoforms, along with Reprogramming Factors, Differentially Regulate the Induction of Cornea-specific Genes.

Sasamoto Y, Hayashi R, Park SJ, Saito-Adachi M, Suzuki Y, Kawasaki S, Quantock AJ, Nakai K, Tsujikawa M, Nishida K. Sasamoto Y, et al. Among authors: park sj. Sci Rep. 2016 Feb 22;6:20807. doi: 10.1038/srep20807. Sci Rep. 2016. PMID: 26899008 Free PMC article.

9

ZBTB16 as a Downstream Target Gene of Osterix Regulates Osteoblastogenesis of Human Multipotent Mesenchymal Stromal Cells.

Onizuka S, Iwata T, Park SJ, Nakai K, Yamato M, Okano T, Izumi Y. Onizuka S, et al. Among authors: park sj. J Cell Biochem. 2016 Oct;117(10):2423-34. doi: 10.1002/jcb.25634. Epub 2016 Jun 29. J Cell Biochem. 2016. PMID: 27335174 Free PMC article.

10

Multidisciplinary insight into clonal expansion of HTLV-1-infected cells in adult T-cell leukemia via modeling by deterministic finite automata coupled with high-throughput sequencing.

Farmanbar A, Firouzi S, Park SJ, Nakai K, Uchimaru K, Watanabe T. Farmanbar A, et al. Among authors: park sj. BMC Med Genomics. 2017 Jan 31;10(1):4. doi: 10.1186/s12920-016-0241-2. BMC Med Genomics. 2017. PMID: 28137248 Free PMC article.

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