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Best practices for justifying fossil calibrations.
Parham JF, Donoghue PC, Bell CJ, Calway TD, Head JJ, Holroyd PA, Inoue JG, Irmis RB, Joyce WG, Ksepka DT, Patané JS, Smith ND, Tarver JE, van Tuinen M, Yang Z, Angielczyk KD, Greenwood JM, Hipsley CA, Jacobs L, Makovicky PJ, Müller J, Smith KT, Theodor JM, Warnock RC, Benton MJ. Parham JF, et al. Among authors: patane js. Syst Biol. 2012 Mar;61(2):346-59. doi: 10.1093/sysbio/syr107. Epub 2011 Nov 21. Syst Biol. 2012. PMID: 22105867 Free PMC article. No abstract available.
Synthesizing and databasing fossil calibrations: divergence dating and beyond.
Ksepka DT, Benton MJ, Carrano MT, Gandolfo MA, Head JJ, Hermsen EJ, Joyce WG, Lamm KS, Patané JS, Phillips MJ, Polly PD, Van Tuinen M, Ware JL, Warnock RC, Parham JF. Ksepka DT, et al. Among authors: patane js. Biol Lett. 2011 Dec 23;7(6):801-3. doi: 10.1098/rsbl.2011.0356. Epub 2011 Apr 27. Biol Lett. 2011. PMID: 21525049 Free PMC article.
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Patané JSL, Martins J Jr, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Patané JSL, et al. BMC Genomics. 2019 Sep 9;20(1):700. doi: 10.1186/s12864-019-6007-4. BMC Genomics. 2019. PMID: 31500575 Free PMC article.
Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses.
Patané JS, Martins J, Beatriz Castelão A, Nishibe C, Montera L, Bigi F, Zumárraga MJ, Cataldi AA, Fonseca Junior A, Roxo E, Luiza A, Osório AR, Jorge Ufms KS, Thacker TC, Almeida NF, Araújo FR, Setubal JC. Patané JS, et al. Genome Biol Evol. 2017 Feb 13;9(3):521-35. doi: 10.1093/gbe/evx022. Online ahead of print. Genome Biol Evol. 2017. PMID: 28201585 Free PMC article.
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
36 results