Petrov AI - Search Results

1

JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs.

Roll J, Zirbel CL, Sweeney B, Petrov AI, Leontis N. Roll J, et al. Among authors: petrov ai. Nucleic Acids Res. 2016 Jul 8;44(W1):W320-7. doi: 10.1093/nar/gkw453. Epub 2016 May 27. Nucleic Acids Res. 2016. PMID: 27235417 Free PMC article.

2

WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs.

Petrov AI, Zirbel CL, Leontis NB. Petrov AI, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W50-5. doi: 10.1093/nar/gkr249. Epub 2011 Apr 22. Nucleic Acids Res. 2011. PMID: 21515634 Free PMC article.

3

Comprehensive survey and geometric classification of base triples in RNA structures.

Abu Almakarem AS, Petrov AI, Stombaugh J, Zirbel CL, Leontis NB. Abu Almakarem AS, et al. Among authors: petrov ai. Nucleic Acids Res. 2012 Feb;40(4):1407-23. doi: 10.1093/nar/gkr810. Epub 2011 Nov 3. Nucleic Acids Res. 2012. PMID: 22053086 Free PMC article.

4

R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.

Rahrig RR, Petrov AI, Leontis NB, Zirbel CL. Rahrig RR, et al. Among authors: petrov ai. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W15-21. doi: 10.1093/nar/gkt417. Epub 2013 May 28. Nucleic Acids Res. 2013. PMID: 23716643 Free PMC article.

5

The Nucleic Acid Database: new features and capabilities.

Coimbatore Narayanan B, Westbrook J, Ghosh S, Petrov AI, Sweeney B, Zirbel CL, Leontis NB, Berman HM. Coimbatore Narayanan B, et al. Among authors: petrov ai. Nucleic Acids Res. 2014 Jan;42(Database issue):D114-22. doi: 10.1093/nar/gkt980. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185695 Free PMC article.

6

R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.

Cannone JJ, Sweeney BA, Petrov AI, Gutell RR, Zirbel CL, Leontis N. Cannone JJ, et al. Among authors: petrov ai. Nucleic Acids Res. 2015 Jul 1;43(W1):W15-23. doi: 10.1093/nar/gkv543. Epub 2015 Jun 5. Nucleic Acids Res. 2015. PMID: 26048960 Free PMC article.

7

Identifying novel sequence variants of RNA 3D motifs.

Zirbel CL, Roll J, Sweeney BA, Petrov AI, Pirrung M, Leontis NB. Zirbel CL, et al. Among authors: petrov ai. Nucleic Acids Res. 2015 Sep 3;43(15):7504-20. doi: 10.1093/nar/gkv651. Epub 2015 Jun 29. Nucleic Acids Res. 2015. PMID: 26130723 Free PMC article.

8

A three-dimensional RNA motif in Potato spindle tuber viroid mediates trafficking from palisade mesophyll to spongy mesophyll in Nicotiana benthamiana.

Takeda R, Petrov AI, Leontis NB, Ding B. Takeda R, et al. Among authors: petrov ai. Plant Cell. 2011 Jan;23(1):258-72. doi: 10.1105/tpc.110.081414. Epub 2011 Jan 21. Plant Cell. 2011. PMID: 21258006 Free PMC article.

9

Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.

Petrov AI, Zirbel CL, Leontis NB. Petrov AI, et al. RNA. 2013 Oct;19(10):1327-40. doi: 10.1261/rna.039438.113. Epub 2013 Aug 22. RNA. 2013. PMID: 23970545 Free PMC article.

10

Exploring Non-Coding RNAs in RNAcentral.

Sweeney BA, Tagmazian AA, Ribas CE, Finn RD, Bateman A, Petrov AI. Sweeney BA, et al. Among authors: petrov ai. Curr Protoc Bioinformatics. 2020 Sep;71(1):e104. doi: 10.1002/cpbi.104. Curr Protoc Bioinformatics. 2020. PMID: 32846052

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