Planes FJ - Search Results

1

A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism.

Apaolaza I, San José-Enériz E, Valcarcel LV, Agirre X, Prosper F, Planes FJ. Apaolaza I, et al. Among authors: planes fj. PLoS Comput Biol. 2022 Mar 14;18(3):e1009395. doi: 10.1371/journal.pcbi.1009395. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35286311 Free PMC article.

2

In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes.

Rezola A, Pey J, Rubio Á, Planes FJ. Rezola A, et al. Among authors: planes fj. PLoS One. 2014 Aug 5;9(8):e103998. doi: 10.1371/journal.pone.0103998. eCollection 2014. PLoS One. 2014. PMID: 25093336 Free PMC article.

3

An in-silico approach to predict and exploit synthetic lethality in cancer metabolism.

Apaolaza I, San José-Eneriz E, Tobalina L, Miranda E, Garate L, Agirre X, Prósper F, Planes FJ. Apaolaza I, et al. Among authors: planes fj. Nat Commun. 2017 Sep 6;8(1):459. doi: 10.1038/s41467-017-00555-y. Nat Commun. 2017. PMID: 28878380 Free PMC article.

4

In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer.

Pey J, San José-Eneriz E, Ochoa MC, Apaolaza I, de Atauri P, Rubio A, Cendoya X, Miranda E, Garate L, Cascante M, Carracedo A, Agirre X, Prosper F, Planes FJ. Pey J, et al. Among authors: planes fj. Sci Rep. 2017 Oct 30;7(1):14358. doi: 10.1038/s41598-017-14067-8. Sci Rep. 2017. PMID: 29084986 Free PMC article.

5

COBRA methods and metabolic drug targets in cancer.

Apaolaza I, José-Eneriz ES, Agirre X, Prósper F, Planes FJ. Apaolaza I, et al. Among authors: planes fj. Mol Cell Oncol. 2017 Nov 30;5(1):e1389672. doi: 10.1080/23723556.2017.1389672. eCollection 2018. Mol Cell Oncol. 2017. PMID: 29404389 Free PMC article.

6

gMCS: fast computation of genetic minimal cut sets in large networks.

Apaolaza I, Valcarcel LV, Planes FJ. Apaolaza I, et al. Among authors: planes fj. Bioinformatics. 2019 Feb 1;35(3):535-537. doi: 10.1093/bioinformatics/bty656. Bioinformatics. 2019. PMID: 30052768

7

CANCERTOOL: A Visualization and Representation Interface to Exploit Cancer Datasets.

Cortazar AR, Torrano V, Martín-Martín N, Caro-Maldonado A, Camacho L, Hermanova I, Guruceaga E, Lorenzo-Martín LF, Caloto R, Gomis RR, Apaolaza I, Quesada V, Trka J, Gomez-Muñoz A, Vincent S, Bustelo XR, Planes FJ, Aransay AM, Carracedo A. Cortazar AR, et al. Among authors: planes fj. Cancer Res. 2018 Nov 1;78(21):6320-6328. doi: 10.1158/0008-5472.CAN-18-1669. Epub 2018 Sep 19. Cancer Res. 2018. PMID: 30232219

8

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.

Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, Aurich MK, Clancy CM, Modamio J, Sauls JT, Noronha A, Bordbar A, Cousins B, El Assal DC, Valcarcel LV, Apaolaza I, Ghaderi S, Ahookhosh M, Ben Guebila M, Kostromins A, Sompairac N, Le HM, Ma D, Sun Y, Wang L, Yurkovich JT, Oliveira MAP, Vuong PT, El Assal LP, Kuperstein I, Zinovyev A, Hinton HS, Bryant WA, Aragón Artacho FJ, Planes FJ, Stalidzans E, Maass A, Vempala S, Hucka M, Saunders MA, Maranas CD, Lewis NE, Sauter T, Palsson BØ, Thiele I, Fleming RMT. Heirendt L, et al. Among authors: planes fj. Nat Protoc. 2019 Mar;14(3):639-702. doi: 10.1038/s41596-018-0098-2. Nat Protoc. 2019. PMID: 30787451 Free PMC article.

9

rMTA: robust metabolic transformation analysis.

Valcárcel LV, Torrano V, Tobalina L, Carracedo A, Planes FJ. Valcárcel LV, et al. Among authors: planes fj. Bioinformatics. 2019 Nov 1;35(21):4350-4355. doi: 10.1093/bioinformatics/btz231. Bioinformatics. 2019. PMID: 30923806

10

Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth.

Fuertes A, Pérez-Burillo S, Apaolaza I, Vallès Y, Francino MP, Rufián-Henares JÁ, Planes FJ. Fuertes A, et al. Among authors: planes fj. Front Microbiol. 2019 Apr 24;10:848. doi: 10.3389/fmicb.2019.00848. eCollection 2019. Front Microbiol. 2019. PMID: 31105659 Free PMC article.

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