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Viruses of haloarchaea.
Luk AW, Williams TJ, Erdmann S, Papke RT, Cavicchioli R. Luk AW, et al. Life (Basel). 2014 Nov 13;4(4):681-715. doi: 10.3390/life4040681. Life (Basel). 2014. PMID: 25402735 Free PMC article. Review.
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tail …
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect …
Viruses and Their Interactions With Bacteria and Archaea of Hypersaline Great Salt Lake.
Bhattarai B, Bhattacharjee AS, Coutinho FH, Goel RK. Bhattarai B, et al. Front Microbiol. 2021 Sep 28;12:701414. doi: 10.3389/fmicb.2021.701414. eCollection 2021. Front Microbiol. 2021. PMID: 34650523 Free PMC article.
The GSL sediment virosphere consisted of Haloviruses (32.07 19.33%) and members of families Siphoviridae (39.12 19.8%), Myoviridae (13.7 6.6%), and Podoviridae (5.43 0.64%). Our results demonstrate that salinity alongside the concentration of organic carbon and inorganic n …
The GSL sediment virosphere consisted of Haloviruses (32.07 19.33%) and members of families Siphoviridae (39.12 19.8%), Myoviridae (13.7 6.6 …
The interaction of four-way DNA junctions with resolving enzymes.
Lilley DM. Lilley DM. Biochem Soc Trans. 2010 Apr;38(2):399-403. doi: 10.1042/BST0380399. Biochem Soc Trans. 2010. PMID: 20298191 Review.
Four-way DNA (Holliday) junctions are resolved into duplex species by the action of the junction-resolving enzymes, nucleases selective for the structure of helical branchpoints. These have been isolated from bacteria and their phages, archaea, yeasts and mammals, includin …
Four-way DNA (Holliday) junctions are resolved into duplex species by the action of the junction-resolving enzymes, nucleases selective for …
Insights into the human gut virome by sampling a population from the Indian subcontinent.
Bhardwaj K, Garg A, Pandey AD, Sharma H, Kumar M, Vrati S. Bhardwaj K, et al. J Gen Virol. 2022 Aug;103(8). doi: 10.1099/jgv.0.001774. J Gen Virol. 2022. PMID: 35951476
Analysis shows that, similar to the populations investigated earlier, majority of the identified virome belongs to bacteriophages and a smaller fraction (<20 %) consists of viruses that infect animals, archaea, protists, multiple domains or plants. However, crAss-like p …
Analysis shows that, similar to the populations investigated earlier, majority of the identified virome belongs to bacteriophages and a smal …
The microbiome and its association with antibiotic resistance genes in the hadal biosphere at the Yap Trench.
Su H, Wu C, Han P, Liu Z, Liang M, Zhang Z, Wang Z, Guo G, He X, Pang J, Wang C, Weng S, He J. Su H, et al. J Hazard Mater. 2022 Oct 5;439:129543. doi: 10.1016/j.jhazmat.2022.129543. Epub 2022 Jul 6. J Hazard Mater. 2022. PMID: 35870206
Here, we profiled the microbiome diversity and ARG occurrence in seawater and sediments of the Yap Trench (YT) using metagenomic sequencing. Within the prokaryote (bacteria and archaea) lineages, the main components of bacteria were Gammaproteobacteria (77.76 %), Firmicute …
Here, we profiled the microbiome diversity and ARG occurrence in seawater and sediments of the Yap Trench (YT) using metagenomic sequencing. …
Structural and functional characteristics of soil microbial community in a Pinus massoniana forest at different elevations.
Zhang J, Xu M, Zou X, Chen J. Zhang J, et al. PeerJ. 2022 Jul 15;10:e13504. doi: 10.7717/peerj.13504. eCollection 2022. PeerJ. 2022. PMID: 35860041 Free PMC article.
We observed that the richness of bacteria, fungi, and viruses in the soil microbial community changed in a unimodal pattern with increasing elevation while that of Archaea first increased significantly, then decreased, and finally increased again. Euryarchaeota and Thaumar …
We observed that the richness of bacteria, fungi, and viruses in the soil microbial community changed in a unimodal pattern with increasing …
Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.
Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P. Aiewsakun P, et al. J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17. J Gen Virol. 2018. PMID: 30016225 Free PMC article.
In the current study, a parallel analysis of prokaryotic virus families revealed quite different sequence relationships, particularly those of tailed phage families (Siphoviridae, Myoviridae and Podoviridae), where members of the same family were generally far more diverge …
In the current study, a parallel analysis of prokaryotic virus families revealed quite different sequence relationships, particularly those …
Natural tuning of restriction endonuclease synthesis by cluster of rare arginine codons.
Mruk I, Kaczorowski T, Witczak A. Mruk I, et al. Sci Rep. 2019 Apr 9;9(1):5808. doi: 10.1038/s41598-019-42311-w. Sci Rep. 2019. PMID: 30967604 Free PMC article.
Restriction-modification (R-M) systems are highly widespread among bacteria and archaea, and they appear to play a pivotal role in modulating horizontal gene transfer, as well as in protecting the host organism against viruses and other invasive DNA particles. ...
Restriction-modification (R-M) systems are highly widespread among bacteria and archaea, and they appear to play a pivotal role in mo …
Estimate of the diversity of viral and bacterial assemblage in the coastal water of Lake Baikal.
Butina TV, Bukin YS, Krasnopeev AS, Belykh OI, Tupikin AE, Kabilov MR, Sakirko МV, Belikov SI. Butina TV, et al. FEMS Microbiol Lett. 2019 May 1;366(9):fnz094. doi: 10.1093/femsle/fnz094. FEMS Microbiol Lett. 2019. PMID: 31049590
Out of 1 030 169 processed virome reads, 37.4% of sequences (385 421) were identified as viral; 15.1% were identified as nonviral and related to the domains Eukarya, Bacteria and Archaea; and 47.5% had no matches in the databases. The identified virotypes belonged to diffe …
Out of 1 030 169 processed virome reads, 37.4% of sequences (385 421) were identified as viral; 15.1% were identified as nonviral and relate …
AP-APSE dpol intein: A novel family A DNA polymerase intein domain.
Rajarajan S, Ibrahim KS, Pandian SK. Rajarajan S, et al. Bioinformation. 2011 May 7;6(4):149-52. doi: 10.6026/97320630006149. Bioinformation. 2011. PMID: 21572881 Free PMC article.
After their discovery, inteins have been quickly identified in organisms from all three kingdoms of life - eucarya, bacteria and archaea, but their distribution is sporadic. Here we report the identification and bioinformatics characterization of intein in DNA polymerase A …
After their discovery, inteins have been quickly identified in organisms from all three kingdoms of life - eucarya, bacteria and archaea …
17 results