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Viruses of haloarchaea.
Luk AW, Williams TJ, Erdmann S, Papke RT, Cavicchioli R. Luk AW, et al. Life (Basel). 2014 Nov 13;4(4):681-715. doi: 10.3390/life4040681. Life (Basel). 2014. PMID: 25402735 Free PMC article. Review.
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tail …
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect …
The interaction of four-way DNA junctions with resolving enzymes.
Lilley DM. Lilley DM. Biochem Soc Trans. 2010 Apr;38(2):399-403. doi: 10.1042/BST0380399. Biochem Soc Trans. 2010. PMID: 20298191 Review.
Four-way DNA (Holliday) junctions are resolved into duplex species by the action of the junction-resolving enzymes, nucleases selective for the structure of helical branchpoints. These have been isolated from bacteria and their phages, archaea, yeasts and mammals, includin …
Four-way DNA (Holliday) junctions are resolved into duplex species by the action of the junction-resolving enzymes, nucleases selective for …
Viruses and Their Interactions With Bacteria and Archaea of Hypersaline Great Salt Lake.
Bhattarai B, Bhattacharjee AS, Coutinho FH, Goel RK. Bhattarai B, et al. Front Microbiol. 2021 Sep 28;12:701414. doi: 10.3389/fmicb.2021.701414. eCollection 2021. Front Microbiol. 2021. PMID: 34650523 Free PMC article.
The GSL sediment virosphere consisted of Haloviruses (32.07 19.33%) and members of families Siphoviridae (39.12 19.8%), Myoviridae (13.7 6.6%), and Podoviridae (5.43 0.64%). Our results demonstrate that salinity alongside the concentration of organic carbon and inorganic n …
The GSL sediment virosphere consisted of Haloviruses (32.07 19.33%) and members of families Siphoviridae (39.12 19.8%), Myoviridae (13.7 6.6 …
Nonbacterial Microflora in Wastewater Treatment Plants: an Underappreciated Potential Source of Pathogens.
Ariyadasa S, Taylor W, Weaver L, McGill E, Billington C, Pattis I. Ariyadasa S, et al. Microbiol Spectr. 2023 Jun 15;11(3):e0048123. doi: 10.1128/spectrum.00481-23. Epub 2023 May 24. Microbiol Spectr. 2023. PMID: 37222623 Free PMC article.
Our results suggest a similar trend across many taxa, with an increase in relative abundance in oxidation pond samples compared to influent and effluent samples, except for archaea, which had the opposite trend. Additionally, some microbial families, such as Podoviridae …
Our results suggest a similar trend across many taxa, with an increase in relative abundance in oxidation pond samples compared to influent …
Insights into the human gut virome by sampling a population from the Indian subcontinent.
Bhardwaj K, Garg A, Pandey AD, Sharma H, Kumar M, Vrati S. Bhardwaj K, et al. J Gen Virol. 2022 Aug;103(8). doi: 10.1099/jgv.0.001774. J Gen Virol. 2022. PMID: 35951476
Analysis shows that, similar to the populations investigated earlier, majority of the identified virome belongs to bacteriophages and a smaller fraction (<20 %) consists of viruses that infect animals, archaea, protists, multiple domains or plants. However, crAss-like p …
Analysis shows that, similar to the populations investigated earlier, majority of the identified virome belongs to bacteriophages and a smal …
The microbiome and its association with antibiotic resistance genes in the hadal biosphere at the Yap Trench.
Su H, Wu C, Han P, Liu Z, Liang M, Zhang Z, Wang Z, Guo G, He X, Pang J, Wang C, Weng S, He J. Su H, et al. J Hazard Mater. 2022 Oct 5;439:129543. doi: 10.1016/j.jhazmat.2022.129543. Epub 2022 Jul 6. J Hazard Mater. 2022. PMID: 35870206
Here, we profiled the microbiome diversity and ARG occurrence in seawater and sediments of the Yap Trench (YT) using metagenomic sequencing. Within the prokaryote (bacteria and archaea) lineages, the main components of bacteria were Gammaproteobacteria (77.76 %), Firmicute …
Here, we profiled the microbiome diversity and ARG occurrence in seawater and sediments of the Yap Trench (YT) using metagenomic sequencing. …
Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.
Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P. Aiewsakun P, et al. J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17. J Gen Virol. 2018. PMID: 30016225 Free PMC article.
In the current study, a parallel analysis of prokaryotic virus families revealed quite different sequence relationships, particularly those of tailed phage families (Siphoviridae, Myoviridae and Podoviridae), where members of the same family were generally far more diverge …
In the current study, a parallel analysis of prokaryotic virus families revealed quite different sequence relationships, particularly those …
Microbiome and virome on indoor surfaces of an Antarctic research ship.
Prado T, Magalhães MGP, Moreira DA, Brandão ML, Fumian TM, Ferreira FC, Chame M, Leomil L, Degrave WMS, Leite JPG, Miagostovich MP. Prado T, et al. Mem Inst Oswaldo Cruz. 2023 Sep 4;118:e230084. doi: 10.1590/0074-02760230084. eCollection 2023. Mem Inst Oswaldo Cruz. 2023. PMID: 37672426 Free PMC article.
FINDINGS: Considering the total fraction of the microbiome, the relative abundance of bacteria, eukaryotes, viruses, and archaea was 83.7%, 16.2%, 0.04%, and 0.002%, respectively. Proteobacteria was the most abundant bacterial phyla, followed by Firmicutes, Actinobacteria, …
FINDINGS: Considering the total fraction of the microbiome, the relative abundance of bacteria, eukaryotes, viruses, and archaea was …
Structural and functional characteristics of soil microbial community in a Pinus massoniana forest at different elevations.
Zhang J, Xu M, Zou X, Chen J. Zhang J, et al. PeerJ. 2022 Jul 15;10:e13504. doi: 10.7717/peerj.13504. eCollection 2022. PeerJ. 2022. PMID: 35860041 Free PMC article.
We observed that the richness of bacteria, fungi, and viruses in the soil microbial community changed in a unimodal pattern with increasing elevation while that of Archaea first increased significantly, then decreased, and finally increased again. Euryarchaeota and Thaumar …
We observed that the richness of bacteria, fungi, and viruses in the soil microbial community changed in a unimodal pattern with increasing …
A glance at the gut microbiota and the functional roles of the microbes based on marmot fecal samples.
Chen C, Chen S, Wang B. Chen C, et al. Front Microbiol. 2023 Apr 14;14:1035944. doi: 10.3389/fmicb.2023.1035944. eCollection 2023. Front Microbiol. 2023. PMID: 37125200 Free PMC article.
The viral families were Myoviridae, Siphoviridae, Phycodnaviridae, Herpesviridae and Podoviridae. The dominant fungi phyla were Ascomycota, Basidiomycota, and Blastocladiomycota. The dominant archaea were Biobacteria, Omoarchaea, Nanoarchaea, and Microbacteria. ...
The viral families were Myoviridae, Siphoviridae, Phycodnaviridae, Herpesviridae and Podoviridae. The dominant fungi phyla were Ascom …
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