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Viruses of haloarchaea.
Luk AW, Williams TJ, Erdmann S, Papke RT, Cavicchioli R. Luk AW, et al. Life (Basel). 2014 Nov 13;4(4):681-715. doi: 10.3390/life4040681. Life (Basel). 2014. PMID: 25402735 Free PMC article. Review.
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tail …
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect …
The interaction of four-way DNA junctions with resolving enzymes.
Lilley DM. Lilley DM. Biochem Soc Trans. 2010 Apr;38(2):399-403. doi: 10.1042/BST0380399. Biochem Soc Trans. 2010. PMID: 20298191 Review.
Four-way DNA (Holliday) junctions are resolved into duplex species by the action of the junction-resolving enzymes, nucleases selective for the structure of helical branchpoints. These have been isolated from bacteria and their phages, archaea, yeasts and mammals, includin …
Four-way DNA (Holliday) junctions are resolved into duplex species by the action of the junction-resolving enzymes, nucleases selective for …
Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.
Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P. Aiewsakun P, et al. J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17. J Gen Virol. 2018. PMID: 30016225 Free PMC article.
In the current study, a parallel analysis of prokaryotic virus families revealed quite different sequence relationships, particularly those of tailed phage families (Siphoviridae, Myoviridae and Podoviridae), where members of the same family were generally far more diverge …
In the current study, a parallel analysis of prokaryotic virus families revealed quite different sequence relationships, particularly those …
Viruses and Their Interactions With Bacteria and Archaea of Hypersaline Great Salt Lake.
Bhattarai B, Bhattacharjee AS, Coutinho FH, Goel RK. Bhattarai B, et al. Front Microbiol. 2021 Sep 28;12:701414. doi: 10.3389/fmicb.2021.701414. eCollection 2021. Front Microbiol. 2021. PMID: 34650523 Free PMC article.
The GSL sediment virosphere consisted of Haloviruses (32.07 19.33%) and members of families Siphoviridae (39.12 19.8%), Myoviridae (13.7 6.6%), and Podoviridae (5.43 0.64%). Our results demonstrate that salinity alongside the concentration of organic carbon and inorganic n …
The GSL sediment virosphere consisted of Haloviruses (32.07 19.33%) and members of families Siphoviridae (39.12 19.8%), Myoviridae (13.7 6.6 …
Natural tuning of restriction endonuclease synthesis by cluster of rare arginine codons.
Mruk I, Kaczorowski T, Witczak A. Mruk I, et al. Sci Rep. 2019 Apr 9;9(1):5808. doi: 10.1038/s41598-019-42311-w. Sci Rep. 2019. PMID: 30967604 Free PMC article.
Restriction-modification (R-M) systems are highly widespread among bacteria and archaea, and they appear to play a pivotal role in modulating horizontal gene transfer, as well as in protecting the host organism against viruses and other invasive DNA particles. ...
Restriction-modification (R-M) systems are highly widespread among bacteria and archaea, and they appear to play a pivotal role in mo …
Estimate of the diversity of viral and bacterial assemblage in the coastal water of Lake Baikal.
Butina TV, Bukin YS, Krasnopeev AS, Belykh OI, Tupikin AE, Kabilov MR, Sakirko МV, Belikov SI. Butina TV, et al. FEMS Microbiol Lett. 2019 May 1;366(9):fnz094. doi: 10.1093/femsle/fnz094. FEMS Microbiol Lett. 2019. PMID: 31049590
Out of 1 030 169 processed virome reads, 37.4% of sequences (385 421) were identified as viral; 15.1% were identified as nonviral and related to the domains Eukarya, Bacteria and Archaea; and 47.5% had no matches in the databases. The identified virotypes belonged to diffe …
Out of 1 030 169 processed virome reads, 37.4% of sequences (385 421) were identified as viral; 15.1% were identified as nonviral and relate …
AP-APSE dpol intein: A novel family A DNA polymerase intein domain.
Rajarajan S, Ibrahim KS, Pandian SK. Rajarajan S, et al. Bioinformation. 2011 May 7;6(4):149-52. doi: 10.6026/97320630006149. Bioinformation. 2011. PMID: 21572881 Free PMC article.
After their discovery, inteins have been quickly identified in organisms from all three kingdoms of life - eucarya, bacteria and archaea, but their distribution is sporadic. Here we report the identification and bioinformatics characterization of intein in DNA polymerase A …
After their discovery, inteins have been quickly identified in organisms from all three kingdoms of life - eucarya, bacteria and archaea
Metabolic engineering of cofactor F420 production in Mycobacterium smegmatis.
Bashiri G, Rehan AM, Greenwood DR, Dickson JM, Baker EN. Bashiri G, et al. PLoS One. 2010 Dec 29;5(12):e15803. doi: 10.1371/journal.pone.0015803. PLoS One. 2010. PMID: 21209917 Free PMC article.
Cofactor F(420) is a unique electron carrier in a number of microorganisms including Archaea and Mycobacteria. It has been shown that F(420) has a direct and important role in archaeal energy metabolism whereas the role of F(420) in mycobacterial metabolism has only begun …
Cofactor F(420) is a unique electron carrier in a number of microorganisms including Archaea and Mycobacteria. It has been shown that …
Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup.
Shen PS, Domek MJ, Sanz-García E, Makaju A, Taylor RM, Hoggan R, Culumber MD, Oberg CJ, Breakwell DP, Prince JT, Belnap DM. Shen PS, et al. J Virol. 2012 Aug;86(15):7907-17. doi: 10.1128/JVI.00407-12. Epub 2012 May 16. J Virol. 2012. PMID: 22593163 Free PMC article.
A conserved module of structural genes places CW02 in the T7 supergroup, members of which are found in diverse aquatic environments, including marine and freshwater ecosystems. CW02 has morphological similarities to viruses of the Podoviridae family. The structure of CW02, …
A conserved module of structural genes places CW02 in the T7 supergroup, members of which are found in diverse aquatic environments, includi …
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut.
Castro-Mejía JL, Muhammed MK, Kot W, Neve H, Franz CM, Hansen LH, Vogensen FK, Nielsen DS. Castro-Mejía JL, et al. Microbiome. 2015 Nov 17;3:64. doi: 10.1186/s40168-015-0131-4. Microbiome. 2015. PMID: 26577924 Free PMC article.
BACKGROUND: The human gut is densely populated with archaea, eukaryotes, bacteria, and their viruses, such as bacteriophages. ...To quantify phage recovery, samples were spiked with low numbers of c2, 29, and T4 phages (representatives of the Siphoviridae, Podoviridae
BACKGROUND: The human gut is densely populated with archaea, eukaryotes, bacteria, and their viruses, such as bacteriophages. ...To q …
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