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Page 1
A toxin-antitoxin system provides phage defense via DNA damage and repair.
Pu H, Chen Y, Zhao X, Dai L, Tong A, Tang D, Chen Q, Yu Y. Pu H, et al. Nat Commun. 2025 Apr 1;16(1):3141. doi: 10.1038/s41467-025-58540-9. Nat Commun. 2025. PMID: 40169592 Free PMC article.
Widespread in bacteria and archaea, toxin-antitoxin (TA) systems have been recently demonstrated to function in phage defense. ...
Widespread in bacteria and archaea, toxin-antitoxin (TA) systems have been recently demonstrated to function in phage defense. ...
Viruses of haloarchaea.
Luk AW, Williams TJ, Erdmann S, Papke RT, Cavicchioli R. Luk AW, et al. Life (Basel). 2014 Nov 13;4(4):681-715. doi: 10.3390/life4040681. Life (Basel). 2014. PMID: 25402735 Free PMC article. Review.
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tail …
In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect …
Phage diversity in human breast milk: a systematic review.
Guo Y, Liu Y, Xu S, Zhang R, Yu Z, He W. Guo Y, et al. Eur J Pediatr. 2025 May 10;184(6):334. doi: 10.1007/s00431-025-06173-x. Eur J Pediatr. 2025. PMID: 40347294 Free PMC article.
This microbiome includes bacteria, viruses, archaea, and fungi. Bacteriophages, as key components of the virome, continually prey on bacterial hosts, thereby influencing the development of early gut microbial communities. ...Seven families of bacteriophages were identified …
This microbiome includes bacteria, viruses, archaea, and fungi. Bacteriophages, as key components of the virome, continually prey on …
Nonbacterial Microflora in Wastewater Treatment Plants: an Underappreciated Potential Source of Pathogens.
Ariyadasa S, Taylor W, Weaver L, McGill E, Billington C, Pattis I. Ariyadasa S, et al. Microbiol Spectr. 2023 Jun 15;11(3):e0048123. doi: 10.1128/spectrum.00481-23. Epub 2023 May 24. Microbiol Spectr. 2023. PMID: 37222623 Free PMC article.
Our results suggest a similar trend across many taxa, with an increase in relative abundance in oxidation pond samples compared to influent and effluent samples, except for archaea, which had the opposite trend. Additionally, some microbial families, such as Podoviridae …
Our results suggest a similar trend across many taxa, with an increase in relative abundance in oxidation pond samples compared to influent …
The interaction of four-way DNA junctions with resolving enzymes.
Lilley DM. Lilley DM. Biochem Soc Trans. 2010 Apr;38(2):399-403. doi: 10.1042/BST0380399. Biochem Soc Trans. 2010. PMID: 20298191 Review.
These have been isolated from bacteria and their phages, archaea, yeasts and mammals, including humans. They are all dimeric proteins that bind with high selectivity to DNA junctions and generate bilateral cleavage within the lifetime of the DNA-protein complex. ...
These have been isolated from bacteria and their phages, archaea, yeasts and mammals, including humans. They are all dimeric proteins …
Metagenomics reveals the divergence of gut microbiome composition and function in two common pika species (Ochotona curzoniae and Ochotona daurica) in China.
Hu X, Bi J, Yu Q, Li H. Hu X, et al. FEMS Microbiol Lett. 2024 Jan 9;371:fnae092. doi: 10.1093/femsle/fnae092. FEMS Microbiol Lett. 2024. PMID: 39500545
Prevotella, Methanosarcina, Rhizophagus, and Podoviridae were abundant bacteria, archaea, eukaryotes, and viruses in Plateau pikas, respectively. ...
Prevotella, Methanosarcina, Rhizophagus, and Podoviridae were abundant bacteria, archaea, eukaryotes, and viruses in Plateau p …
Insights into the human gut virome by sampling a population from the Indian subcontinent.
Bhardwaj K, Garg A, Pandey AD, Sharma H, Kumar M, Vrati S. Bhardwaj K, et al. J Gen Virol. 2022 Aug;103(8). doi: 10.1099/jgv.0.001774. J Gen Virol. 2022. PMID: 35951476
Analysis shows that, similar to the populations investigated earlier, majority of the identified virome belongs to bacteriophages and a smaller fraction (<20 %) consists of viruses that infect animals, archaea, protists, multiple domains or plants. However, crAss-like p …
Analysis shows that, similar to the populations investigated earlier, majority of the identified virome belongs to bacteriophages and a smal …
Structural and functional characteristics of soil microbial community in a Pinus massoniana forest at different elevations.
Zhang J, Xu M, Zou X, Chen J. Zhang J, et al. PeerJ. 2022 Jul 15;10:e13504. doi: 10.7717/peerj.13504. eCollection 2022. PeerJ. 2022. PMID: 35860041 Free PMC article.
We observed that the richness of bacteria, fungi, and viruses in the soil microbial community changed in a unimodal pattern with increasing elevation while that of Archaea first increased significantly, then decreased, and finally increased again. Euryarchaeota and Thaumar …
We observed that the richness of bacteria, fungi, and viruses in the soil microbial community changed in a unimodal pattern with increasing …
The microbiome and its association with antibiotic resistance genes in the hadal biosphere at the Yap Trench.
Su H, Wu C, Han P, Liu Z, Liang M, Zhang Z, Wang Z, Guo G, He X, Pang J, Wang C, Weng S, He J. Su H, et al. J Hazard Mater. 2022 Oct 5;439:129543. doi: 10.1016/j.jhazmat.2022.129543. Epub 2022 Jul 6. J Hazard Mater. 2022. PMID: 35870206
Here, we profiled the microbiome diversity and ARG occurrence in seawater and sediments of the Yap Trench (YT) using metagenomic sequencing. Within the prokaryote (bacteria and archaea) lineages, the main components of bacteria were Gammaproteobacteria (77.76 %), Firmicute …
Here, we profiled the microbiome diversity and ARG occurrence in seawater and sediments of the Yap Trench (YT) using metagenomic sequencing. …
Microbiome and virome on indoor surfaces of an Antarctic research ship.
Prado T, Magalhães MGP, Moreira DA, Brandão ML, Fumian TM, Ferreira FC, Chame M, Leomil L, Degrave WMS, Leite JPG, Miagostovich MP. Prado T, et al. Mem Inst Oswaldo Cruz. 2023 Sep 4;118:e230084. doi: 10.1590/0074-02760230084. eCollection 2023. Mem Inst Oswaldo Cruz. 2023. PMID: 37672426 Free PMC article.
FINDINGS: Considering the total fraction of the microbiome, the relative abundance of bacteria, eukaryotes, viruses, and archaea was 83.7%, 16.2%, 0.04%, and 0.002%, respectively. Proteobacteria was the most abundant bacterial phyla, followed by Firmicutes, Actinobacteria, …
FINDINGS: Considering the total fraction of the microbiome, the relative abundance of bacteria, eukaryotes, viruses, and archaea was …
25 results