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Viral population estimation using pyrosequencing.
Eriksson N, Pachter L, Mitsuya Y, Rhee SY, Wang C, Gharizadeh B, Ronaghi M, Shafer RW, Beerenwinkel N. Eriksson N, et al. Among authors: ronaghi m. PLoS Comput Biol. 2008 May 9;4(4):e1000074. doi: 10.1371/journal.pcbi.1000074. PLoS Comput Biol. 2008. PMID: 18437230 Free PMC article.
Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1.
Babrzadeh F, Jalili R, Wang C, Shokralla S, Pierce S, Robinson-Mosher A, Nyren P, Shafer RW, Basso LC, de Amorim HV, de Oliveira AJ, Davis RW, Ronaghi M, Gharizadeh B, Stambuk BU. Babrzadeh F, et al. Among authors: ronaghi m. Mol Genet Genomics. 2012 Jun;287(6):485-94. doi: 10.1007/s00438-012-0695-7. Epub 2012 May 6. Mol Genet Genomics. 2012. PMID: 22562254
High throughput automated allele frequency estimation by pyrosequencing.
Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B. Doostzadeh J, et al. Among authors: ronaghi m. PLoS One. 2008 Jul 16;3(7):e2693. doi: 10.1371/journal.pone.0002693. PLoS One. 2008. PMID: 18628978 Free PMC article.
Although divergent in residues of the peptide binding site, conserved chimpanzee Patr-AL and polymorphic human HLA-A*02 have overlapping peptide-binding repertoires.
Gleimer M, Wahl AR, Hickman HD, Abi-Rached L, Norman PJ, Guethlein LA, Hammond JA, Draghi M, Adams EJ, Juo S, Jalili R, Gharizadeh B, Ronaghi M, Garcia KC, Hildebrand WH, Parham P. Gleimer M, et al. Among authors: ronaghi m. J Immunol. 2011 Feb 1;186(3):1575-88. doi: 10.4049/jimmunol.1002990. Epub 2011 Jan 5. J Immunol. 2011. PMID: 21209280 Free PMC article.
Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems.
Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, Babrzadeh F, Gharizadeh B, Grimm D, Kay M, Koike S, Sarnow P, Ronaghi M, Ding SW, Harris E, Chow M, Diamond MS, Kirkegaard K, Glenn JS, Fire AZ. Parameswaran P, et al. Among authors: ronaghi m. PLoS Pathog. 2010 Feb 12;6(2):e1000764. doi: 10.1371/journal.ppat.1000764. PLoS Pathog. 2010. PMID: 20169186 Free PMC article.
111 results