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Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cell-specific responses to bacterial infection.
Fish Shellfish Immunol. 2024 Feb;145:109358. doi: 10.1016/j.fsi.2024.109358. Epub 2024 Jan 3.
Fish Shellfish Immunol. 2024.
PMID: 38176627
Free article.
A versatile nuclei extraction protocol for single nucleus sequencing in non-model species-Optimization in various Atlantic salmon tissues.
Ruiz Daniels R, Taylor RS, Dobie R, Salisbury S, Furniss JJ, Clark E, Macqueen DJ, Robledo D.
Ruiz Daniels R, et al.
PLoS One. 2023 Sep 7;18(9):e0285020. doi: 10.1371/journal.pone.0285020. eCollection 2023.
PLoS One. 2023.
PMID: 37676875
Free PMC article.
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Organized B cell sites in cartilaginous fishes reveal the evolutionary foundation of germinal centers.
Matz H, Taylor RS, Redmond AK, Hill TM, Ruiz Daniels R, Beltran M, Henderson NC, Macqueen DJ, Dooley H.
Matz H, et al. Among authors: ruiz daniels r.
Cell Rep. 2023 Jul 25;42(7):112664. doi: 10.1016/j.celrep.2023.112664. Epub 2023 Jun 20.
Cell Rep. 2023.
PMID: 37342909
Free PMC article.
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Common microgeographical selection patterns revealed in four European conifers.
Scotti I, Lalagüe H, Oddou-Muratorio S, Scotti-Saintagne C, Ruiz Daniels R, Grivet D, Lefevre F, Cubry P, Fady B, González-Martínez SC, Roig A, Lesur-Kupin I, Bagnoli F, Guerin V, Plomion C, Rozenberg P, Vendramin GG.
Scotti I, et al. Among authors: ruiz daniels r.
Mol Ecol. 2023 Jan;32(2):393-411. doi: 10.1111/mec.16750. Epub 2022 Nov 14.
Mol Ecol. 2023.
PMID: 36301304
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Single cell transcriptomics of Atlantic salmon (Salmo salar L.) liver reveals cellular heterogeneity and immunological responses to challenge by Aeromonas salmonicida.
Taylor RS, Ruiz Daniels R, Dobie R, Naseer S, Clark TC, Henderson NC, Boudinot P, Martin SAM, Macqueen DJ.
Taylor RS, et al. Among authors: ruiz daniels r.
Front Immunol. 2022 Aug 24;13:984799. doi: 10.3389/fimmu.2022.984799. eCollection 2022.
Front Immunol. 2022.
PMID: 36091005
Free PMC article.
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Looking for Local Adaptation: Convergent Microevolution in Aleppo Pine (Pinus halepensis).
Ruiz Daniels R, Taylor RS, González-Martínez SC, Vendramin GG, Fady B, Oddou-Muratorio S, Piotti A, Simioni G, Grivet D, Beaumont MA.
Ruiz Daniels R, et al.
Genes (Basel). 2019 Sep 4;10(9):673. doi: 10.3390/genes10090673.
Genes (Basel). 2019.
PMID: 31487909
Free PMC article.
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Inferring selection in instances of long-range colonization: The Aleppo pine (Pinus halepensis) in the Mediterranean Basin.
Ruiz Daniels R, Taylor RS, Serra-Varela MJ, Vendramin GG, González-Martínez SC, Grivet D.
Ruiz Daniels R, et al.
Mol Ecol. 2018 Jul 4. doi: 10.1111/mec.14786. Online ahead of print.
Mol Ecol. 2018.
PMID: 29972881
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