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Nephron Toxicity Profiling via Untargeted Metabolome Analysis Employing a High Performance Liquid Chromatography-Mass Spectrometry-based Experimental and Computational Pipeline.
Ranninger C, Rurik M, Limonciel A, Ruzek S, Reischl R, Wilmes A, Jennings P, Hewitt P, Dekant W, Kohlbacher O, Huber CG. Ranninger C, et al. Among authors: rurik m. J Biol Chem. 2015 Jul 31;290(31):19121-32. doi: 10.1074/jbc.M115.644146. Epub 2015 Jun 8. J Biol Chem. 2015. PMID: 26055719 Free PMC article.
Metabolomics Data Processing Using OpenMS.
Rurik M, Alka O, Aicheler F, Kohlbacher O. Rurik M, et al. Methods Mol Biol. 2020;2104:49-60. doi: 10.1007/978-1-0716-0239-3_4. Methods Mol Biol. 2020. PMID: 31953812 Review.
Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells.
Scheidt T, Alka O, Gonczarowska-Jorge H, Gruber W, Rathje F, Dell'Aica M, Rurik M, Kohlbacher O, Zahedi RP, Aberger F, Huber CG. Scheidt T, et al. Among authors: rurik m. Cell Commun Signal. 2020 Jun 23;18(1):99. doi: 10.1186/s12964-020-00591-0. Cell Commun Signal. 2020. PMID: 32576205 Free PMC article.
OpenMS: a flexible open-source software platform for mass spectrometry data analysis.
Röst HL, Sachsenberg T, Aiche S, Bielow C, Weisser H, Aicheler F, Andreotti S, Ehrlich HC, Gutenbrunner P, Kenar E, Liang X, Nahnsen S, Nilse L, Pfeuffer J, Rosenberger G, Rurik M, Schmitt U, Veit J, Walzer M, Wojnar D, Wolski WE, Schilling O, Choudhary JS, Malmström L, Aebersold R, Reinert K, Kohlbacher O. Röst HL, et al. Among authors: rurik m. Nat Methods. 2016 Aug 30;13(9):741-8. doi: 10.1038/nmeth.3959. Nat Methods. 2016. PMID: 27575624