Sarkar IN - Search Results

1

The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life.

Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. Kurt Lienau E, et al. Among authors: sarkar in. Cladistics. 2011 Aug;27(4):417-427. doi: 10.1111/j.1096-0031.2010.00337.x. Epub 2010 Aug 26. Cladistics. 2011. PMID: 34875790 Free article.

2

mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests.

Planet PJ, Sarkar IN. Planet PJ, et al. Among authors: sarkar in. Bioinformatics. 2005 Dec 15;21(24):4423-4. doi: 10.1093/bioinformatics/bti744. Epub 2005 Nov 2. Bioinformatics. 2005. PMID: 16267088

3

ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.

Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. Rosenfeld JA, et al. Among authors: sarkar in. Bioinformatics. 2004 Dec 12;20(18):3462-5. doi: 10.1093/bioinformatics/bth427. Epub 2004 Jul 22. Bioinformatics. 2004. PMID: 15271781

4

caos software for use in character-based DNA barcoding.

Sarkar IN, Planet PJ, Desalle R. Sarkar IN, et al. Mol Ecol Resour. 2008 Nov;8(6):1256-9. doi: 10.1111/j.1755-0998.2008.02235.x. Epub 2008 Aug 14. Mol Ecol Resour. 2008. PMID: 21586014

5

An automated phylogenetic key for classifying homeoboxes.

Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. Sarkar IN, et al. Mol Phylogenet Evol. 2002 Sep;24(3):388-99. doi: 10.1016/s1055-7903(02)00259-2. Mol Phylogenet Evol. 2002. PMID: 12220982

6

Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression.

Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Planet PJ, et al. Among authors: sarkar in. Genome Res. 2001 Jul;11(7):1149-55. doi: 10.1101/gr.187601. Genome Res. 2001. PMID: 11435396 Free article. Review. No abstract available.

7

OrthologID: automation of genome-scale ortholog identification within a parsimony framework.

Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. Chiu JC, et al. Among authors: sarkar in. Bioinformatics. 2006 Mar 15;22(6):699-707. doi: 10.1093/bioinformatics/btk040. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410324

8

Characteristic attributes in cancer microarrays.

Sarkar IN, Planet PJ, Bael TE, Stanley SE, Siddall M, DeSalle R, Figurski DH. Sarkar IN, et al. J Biomed Inform. 2002 Apr;35(2):111-22. doi: 10.1016/s1532-0464(02)00504-x. J Biomed Inform. 2002. PMID: 12474425 Free article.

9

Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.

Sarkar IN, Egan MG, Coruzzi G, Lee EK, DeSalle R. Sarkar IN, et al. BMC Bioinformatics. 2008 Feb 19;9:103. doi: 10.1186/1471-2105-9-103. BMC Bioinformatics. 2008. PMID: 18282301 Free PMC article.

10

The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans.

Perez-Cheeks BA, Planet PJ, Sarkar IN, Clock SA, Xu Q, Figurski DH. Perez-Cheeks BA, et al. Among authors: sarkar in. Mol Microbiol. 2012 Feb;83(4):694-711. doi: 10.1111/j.1365-2958.2011.07955.x. Epub 2012 Jan 13. Mol Microbiol. 2012. PMID: 22239271 Free PMC article.

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