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Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.
Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staefeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M. Gorodkin J, et al. Among authors: sawera m. Genome Biol. 2007;8(4):R45. doi: 10.1186/gb-2007-8-4-r45. Genome Biol. 2007. PMID: 17407547 Free PMC article.
MicroRNA sequence motifs reveal asymmetry between the stem arms.
Gorodkin J, Havgaard JH, Ensterö M, Sawera M, Jensen P, Ohman M, Fredholm M. Gorodkin J, et al. Among authors: sawera m. Comput Biol Chem. 2006 Aug;30(4):249-54. doi: 10.1016/j.compbiolchem.2006.04.006. Epub 2006 Jun 22. Comput Biol Chem. 2006. PMID: 16798093
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa).
Karsenty E, Barillot E, Tosser-Klopp G, Lahbib-Mansais Y, Milan D, Hatey F, Cirera S, Sawera M, Jørgensen CB, Chowdhary B, Fredholm M, Wimmers K, Ponsuksili S, Davoli R, Fontanesi L, Braglia S, Zambonelli P, Bigi D, Neuenschwander S, Gellin J. Karsenty E, et al. Among authors: sawera m. Nucleic Acids Res. 2003 Jan 1;31(1):138-41. doi: 10.1093/nar/gkg061. Nucleic Acids Res. 2003. PMID: 12519967 Free PMC article.
Genome-wide identification of quantitative trait loci in a cross between Hampshire and Landrace I: carcass traits.
Karlskov-Mortensen P, Bruun CS, Braunschweig MH, Sawera M, Markljung E, Enfält AC, Hedebro-Velander I, Josell A, Lindahl G, Lundström K, von Seth G, Jørgensen CB, Andersson L, Fredholm M. Karlskov-Mortensen P, et al. Among authors: sawera m. Anim Genet. 2006 Apr;37(2):156-62. doi: 10.1111/j.1365-2052.2005.01405.x. Anim Genet. 2006. PMID: 16573530
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C. Panitz F, et al. Among authors: sawera m. Bioinformatics. 2007 Jul 1;23(13):i387-91. doi: 10.1093/bioinformatics/btm192. Bioinformatics. 2007. PMID: 17646321
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