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Histone deacetylases control lysine acetylation of ribosomal proteins in rice.
Xu Q, Liu Q, Chen Z, Yue Y, Liu Y, Zhao Y, Zhou DX. Xu Q, et al. Nucleic Acids Res. 2021 May 7;49(8):4613-4628. doi: 10.1093/nar/gkab244. Nucleic Acids Res. 2021. PMID: 33836077 Free PMC article.
However, Kac function and regulatory mechanism for most proteins are unclear. In this work, we studied mutation effects of rice genes encoding cytoplasm-localized histone deacetylases (HDAC) on protein acetylome and found that the HDAC protein HDA714 was a ma …
However, Kac function and regulatory mechanism for most proteins are unclear. In this work, we studied mutation effects of rice genes …
Sequence and expression analysis of histone deacetylases in rice.
Fu W, Wu K, Duan J. Fu W, et al. Biochem Biophys Res Commun. 2007 May 18;356(4):843-50. doi: 10.1016/j.bbrc.2007.03.010. Epub 2007 Mar 12. Biochem Biophys Res Commun. 2007. PMID: 17399684
Histone acetylation levels are determined by the action of histone acetyltransferases and histone deacetylases (HDACs). ...The rice RPD3/HDA1-family HDAC proteins can be divided into four classes based on sequence similarity and phylogene …
Histone acetylation levels are determined by the action of histone acetyltransferases and histone deacetylases ( …
Genome-Wide Identification of Histone Modifiers and Their Expression Patterns during Fruit Abscission in Litchi.
Peng M, Ying P, Liu X, Li C, Xia R, Li J, Zhao M. Peng M, et al. Front Plant Sci. 2017 Apr 27;8:639. doi: 10.3389/fpls.2017.00639. eCollection 2017. Front Plant Sci. 2017. PMID: 28496451 Free PMC article.
In this study, several histone modifier (HM) types, including six histone acetyltransferases (HATs), 11 histone deacetylases (HDACs), 48 histone methyltransferases (HMTs), and 22 histone demethylases (HDMs), are identified in litchi (Litc …
In this study, several histone modifier (HM) types, including six histone acetyltransferases (HATs), 11 histone deac …
Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles.
Aiese Cigliano R, Sanseverino W, Cremona G, Ercolano MR, Conicella C, Consiglio FM. Aiese Cigliano R, et al. BMC Genomics. 2013 Jan 28;14:57. doi: 10.1186/1471-2164-14-57. BMC Genomics. 2013. PMID: 23356725 Free PMC article.
Although Solanum lycopersicum is a dicot model plant as well as an important crop, systematic analysis and expression profiling of histone modifier genes (HMs) in tomato are sketchy. RESULTS: Based on recently released tomato whole-genome sequences, we …
Although Solanum lycopersicum is a dicot model plant as well as an important crop, systematic analysis and expression profilin …
Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants.
Alinsug MV, Yu CW, Wu K. Alinsug MV, et al. BMC Plant Biol. 2009 Mar 28;9:37. doi: 10.1186/1471-2229-9-37. BMC Plant Biol. 2009. PMID: 19327164 Free PMC article.
BACKGROUND: Although histone deacetylases from model organisms have been previously identified, there is no clear basis for the classification of histone deacetylases under the RPD3/HDA1 superfamily, particularly on plants. ...Assessing gene …
BACKGROUND: Although histone deacetylases from model organisms have been previously identified, there is no clear basis for th …
OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression.
Zhang H, Lu Y, Zhao Y, Zhou DX. Zhang H, et al. Plant Sci. 2016 Jul;248:28-36. doi: 10.1016/j.plantsci.2016.04.004. Epub 2016 Apr 14. Plant Sci. 2016. PMID: 27181944
OsSRT1 is a NAD(+)-dependent histone deacetylase, closely related to the human SIRT6 that plays key roles in genome stability and metabolic homeostasis. In this work, we investigated the role of OsSRT1 in rice seed development. Down-regulation of OsSRT1 induced high …
OsSRT1 is a NAD(+)-dependent histone deacetylase, closely related to the human SIRT6 that plays key roles in genome stability and met …
Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence.
Lu Y, Xu Q, Liu Y, Yu Y, Cheng ZY, Zhao Y, Zhou DX. Lu Y, et al. Genome Biol. 2018 Sep 25;19(1):144. doi: 10.1186/s13059-018-1533-y. Genome Biol. 2018. PMID: 30253806 Free PMC article.
It remains unknown whether and how histone acylation and acetylation interact to regulate gene expression in plants that have distinct regulatory pathways of primary metabolism. ...CONCLUSION: Kbu, Kcr, and H3K9ac redundantly mark a large number of active gen …
It remains unknown whether and how histone acylation and acetylation interact to regulate gene expression in plants tha …
Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice.
Li C, Huang L, Xu C, Zhao Y, Zhou DX. Li C, et al. PLoS One. 2011;6(7):e21789. doi: 10.1371/journal.pone.0021789. Epub 2011 Jul 8. PLoS One. 2011. PMID: 21760907 Free PMC article.
To study the function of chromatin regulators in hybrid gene expression, the histone deacetylase gene OsHDT1 whose expression displayed a circadian rhythm was over-expressed or inactivated by RNAi in an elite rice parent. ...High t …
To study the function of chromatin regulators in hybrid gene expression, the histone deacetylase gene OsHDT1 who …
Comparative analysis of HD2 type histone deacetylases in higher plants.
Dangl M, Brosch G, Haas H, Loidl P, Lusser A. Dangl M, et al. Planta. 2001 Jun;213(2):280-5. doi: 10.1007/s004250000506. Planta. 2001. PMID: 11469594
Zea mays (L.) histone deacetylase HD2 was identified as a new type of histone deacetylase (HDAC) unrelated to the well-known Rpd3p and Hdalp families but with sequence homology to peptidyl-prolyl cis-trans isomerases (PPIases). Here we show that HD2 is a mult …
Zea mays (L.) histone deacetylase HD2 was identified as a new type of histone deacetylase (HDAC) unrelated to the well-known R …
Identification of candidate genes associated with positive and negative heterosis in rice.
Venu RC, Ma J, Jia Y, Liu G, Jia MH, Nobuta K, Sreerekha MV, Moldenhauer K, McClung AM, Meyers BC, Wang GL. Venu RC, et al. PLoS One. 2014 Apr 17;9(4):e95178. doi: 10.1371/journal.pone.0095178. eCollection 2014. PLoS One. 2014. PMID: 24743656 Free PMC article.
From the MPSS libraries, 1-3 million signatures were obtained. Using cluster analysis, commonly and specifically expressed genes in the parents and their F1 hybrid were identified. ...Seventy one QTLs for these traits were mapped, of which 3 QTLs were novel. Many hi …
From the MPSS libraries, 1-3 million signatures were obtained. Using cluster analysis, commonly and specifically expressed gen …
21 results