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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.
Muus C, Luecken MD, Eraslan G, Sikkema L, Waghray A, Heimberg G, Kobayashi Y, Vaishnav ED, Subramanian A, Smillie C, Jagadeesh KA, Duong ET, Fiskin E, Torlai Triglia E, Ansari M, Cai P, Lin B, Buchanan J, Chen S, Shu J, Haber AL, Chung H, Montoro DT, Adams T, Aliee H, Allon SJ, Andrusivova Z, Angelidis I, Ashenberg O, Bassler K, Bécavin C, Benhar I, Bergenstråhle J, Bergenstråhle L, Bolt L, Braun E, Bui LT, Callori S, Chaffin M, Chichelnitskiy E, Chiou J, Conlon TM, Cuoco MS, Cuomo ASE, Deprez M, Duclos G, Fine D, Fischer DS, Ghazanfar S, Gillich A, Giotti B, Gould J, Guo M, Gutierrez AJ, Habermann AC, Harvey T, He P, Hou X, Hu L, Hu Y, Jaiswal A, Ji L, Jiang P, Kapellos TS, Kuo CS, Larsson L, Leney-Greene MA, Lim K, Litviňuková M, Ludwig LS, Lukassen S, Luo W, Maatz H, Madissoon E, Mamanova L, Manakongtreecheep K, Leroy S, Mayr CH, Mbano IM, McAdams AM, Nabhan AN, Nyquist SK, Penland L, Poirion OB, Poli S, Qi C, Queen R, Reichart D, Rosas I, Schupp JC, Shea CV, Shi X, Sinha R, Sit RV, Slowikowski K, Slyper M, Smith NP, Sountoulidis A, Strunz M, Sullivan TB, Sun D, Talavera-López C, Tan P, Tantivit J, Travaglini KJ, Tucker NR, Vernon KA, Wadsworth MH, Waldman J, Wang X, Xu … See abstract for full author list ➔ Muus C, et al. Among authors: shi x. Nat Med. 2021 Mar;27(3):546-559. doi: 10.1038/s41591-020-01227-z. Epub 2021 Mar 2. Nat Med. 2021. PMID: 33654293 Free PMC article.
Pathologic and gene expression comparison of CT- screen detected and routinely detected stage I/0 lung adenocarcinoma in NCCN risk-matched cohorts.
Burks EJ, Zhang J, Sullivan TB, Shi X, Sands JM, Regis SM, McKee BJ, McKee AB, Zhang S, Liu H, Liu G, Spira A, Beane J, Lenburg ME, Rieger-Christ KM. Burks EJ, et al. Among authors: shi x. Cancer Treat Res Commun. 2021;29:100486. doi: 10.1016/j.ctarc.2021.100486. Epub 2021 Nov 10. Cancer Treat Res Commun. 2021. PMID: 34794107 Free PMC article.
Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways.
Xu K, Shi X, Husted C, Hong R, Wang Y, Ning B, Sullivan TB, Rieger-Christ KM, Duan F, Marques H, Gower AC, Xiao X, Liu H, Liu G, Duclos G, Platt M, Spira AE, Mazzilli SA, Billatos E, Lenburg ME, Campbell JD, Beane JE. Xu K, et al. Among authors: shi x. Sci Rep. 2022 Oct 28;12(1):18168. doi: 10.1038/s41598-022-17832-6. Sci Rep. 2022. PMID: 36307504 Free PMC article.
Bronchial epithelial gene expression and interstitial lung abnormalities.
Menon AA, Lee M, Ke X, Putman RK, Hino T, Rose JA, Duan F, Ash SY, Cho MH, O'Connor GT, Dupuis J, Hatabu H, Lenburg ME, Billatos ES, Hunninghake GM; DECAMP Investigators. Menon AA, et al. Respir Res. 2023 Oct 10;24(1):245. doi: 10.1186/s12931-023-02536-w. Respir Res. 2023. PMID: 37817229 Free PMC article.
Multi-Omics profiling identifies aldehyde dehydrogenase 2 as a critical mediator in the crosstalk between Treg-mediated immunosuppression microenvironment and hepatocellular carcinoma.
Liu ZY, Lin XH, Guo HY, Shi X, Zhang DY, Sun JL, Zhang GC, Xu RC, Wang F, Yu XN, Wang D, Weng SQ, Shen XZ, Liu TT, Dong L, Zhu JM. Liu ZY, et al. Among authors: shi x. Int J Biol Sci. 2024 May 5;20(7):2763-2778. doi: 10.7150/ijbs.93075. eCollection 2024. Int J Biol Sci. 2024. PMID: 38725845 Free PMC article.
Genetically optimizing soybean nodulation improves yield and protein content.
Zhong X, Wang J, Shi X, Bai M, Yuan C, Cai C, Wang N, Zhu X, Kuang H, Wang X, Su J, He X, Liu X, Yang W, Yang C, Kong F, Wang E, Guan Y. Zhong X, et al. Among authors: shi x. Nat Plants. 2024 May 9. doi: 10.1038/s41477-024-01696-x. Online ahead of print. Nat Plants. 2024. PMID: 38724696
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