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PhenoMiner: quantitative phenotype curation at the rat genome database.
Laulederkind SJ, Liu W, Smith JR, Hayman GT, Wang SJ, Nigam R, Petri V, Lowry TF, de Pons J, Dwinell MR, Shimoyama M. Laulederkind SJ, et al. Among authors: shimoyama m. Database (Oxford). 2013 Apr 19;2013:bat015. doi: 10.1093/database/bat015. Print 2013. Database (Oxford). 2013. PMID: 23603846 Free PMC article.
Rat Genome Database (RGD): mapping disease onto the genome.
Twigger S, Lu J, Shimoyama M, Chen D, Pasko D, Long H, Ginster J, Chen CF, Nigam R, Kwitek A, Eppig J, Maltais L, Maglott D, Schuler G, Jacob H, Tonellato PJ. Twigger S, et al. Among authors: shimoyama m. Nucleic Acids Res. 2002 Jan 1;30(1):125-8. doi: 10.1093/nar/30.1.125. Nucleic Acids Res. 2002. PMID: 11752273 Free PMC article.
The Rat Genome Database (RGD): developments towards a phenome database.
de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H. de la Cruz N, et al. Among authors: shimoyama m. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D485-91. doi: 10.1093/nar/gki050. Nucleic Acids Res. 2005. PMID: 15608243 Free PMC article.
Tools and strategies for physiological genomics: the Rat Genome Database.
Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ. Twigger SN, et al. Among authors: shimoyama m. Physiol Genomics. 2005 Oct 17;23(2):246-56. doi: 10.1152/physiolgenomics.00040.2005. Epub 2005 Aug 16. Physiol Genomics. 2005. PMID: 16106031 Free PMC article.
Using multiple ontologies to integrate complex biological data.
Shimoyama M, Petri V, Pasko D, Bromberg S, Wu W, Chen J, Nenasheva N, Kwitek A, Twigger S, Jacob H. Shimoyama M, et al. Comp Funct Genomics. 2005;6(7-8):373-8. doi: 10.1002/cfg.498. Comp Funct Genomics. 2005. PMID: 18629202 Free PMC article.
The Rat Genome Database 2009: variation, ontologies and pathways.
Dwinell MR, Worthey EA, Shimoyama M, Bakir-Gungor B, DePons J, Laulederkind S, Lowry T, Nigram R, Petri V, Smith J, Stoddard A, Twigger SN, Jacob HJ; RGD Team. Dwinell MR, et al. Among authors: shimoyama m. Nucleic Acids Res. 2009 Jan;37(Database issue):D744-9. doi: 10.1093/nar/gkn842. Epub 2008 Nov 7. Nucleic Acids Res. 2009. PMID: 18996890 Free PMC article.
The rat genome database curators: who, what, where, why.
Shimoyama M, Hayman GT, Laulederkind SJ, Nigam R, Lowry TF, Petri V, Smith JR, Wang SJ, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ; RGD Team. Shimoyama M, et al. PLoS Comput Biol. 2009 Nov;5(11):e1000582. doi: 10.1371/journal.pcbi.1000582. Epub 2009 Nov 26. PLoS Comput Biol. 2009. PMID: 19956751 Free PMC article. No abstract available.
RGD: a comparative genomics platform.
Shimoyama M, Smith JR, Hayman T, Laulederkind S, Lowry T, Nigam R, Petri V, Wang SJ, Dwinell M, Jacob H; RGD Team. Shimoyama M, et al. Hum Genomics. 2011 Jan;5(2):124-9. doi: 10.1186/1479-7364-5-2-124. Hum Genomics. 2011. PMID: 21296746 Free PMC article.
640 results