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Showing results for silene conica
Your search for Silene laconica retrieved no results
Chromosome-Level Genome Assembly for the Angiosperm Silene conica.
Fields PD, Weber MM, Waneka G, Broz AK, Sloan DB. Fields PD, et al. Genome Biol Evol. 2023 Nov 1;15(11):evad192. doi: 10.1093/gbe/evad192. Genome Biol Evol. 2023. PMID: 37862134 Free PMC article.
Here, we report a chromosome-level assembly for the genome of Silene conica based on Pacific Bioscience HiFi, Hi-C, and Bionano technologies. ...Silene conica has an exceptionally large mitochondrial genome (>11 Mb), predominantly consisting of sequ …
Here, we report a chromosome-level assembly for the genome of Silene conica based on Pacific Bioscience HiFi, Hi-C, and Bionan …
Chromosome-level genome assembly for the angiosperm Silene conica.
Fields PD, Weber MM, Waneka G, Broz AK, Sloan DB. Fields PD, et al. bioRxiv [Preprint]. 2023 Sep 7:2023.09.05.556365. doi: 10.1101/2023.09.05.556365. bioRxiv. 2023. PMID: 37732249 Free PMC article. Updated. Preprint.
Here, we report a chromosome-level assembly for the genome of Silene conica based on PacBio HiFi, Hi-C and Bionano technologies. ...Silene conica has an exceptionally large mitochondrial genome (>11 Mb), predominantly consisting of sequence of unkno …
Here, we report a chromosome-level assembly for the genome of Silene conica based on PacBio HiFi, Hi-C and Bionano technologie …
Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora.
Williams AM, Itgen MW, Broz AK, Carter OG, Sloan DB. Williams AM, et al. G3 (Bethesda). 2021 Aug 7;11(8):jkab189. doi: 10.1093/g3journal/jkab189. G3 (Bethesda). 2021. PMID: 34849814 Free PMC article.
The angiosperm genus Silene is a model system for several traits of ecological and evolutionary significance in plants, including breeding system and sex chromosome evolution, host-pathogen interactions, invasive species biology, heavy metal tolerance, and cytonuclear inte …
The angiosperm genus Silene is a model system for several traits of ecological and evolutionary significance in plants, including bre …
Conflicting phylogenetic signals in the SlX1/Y1 gene in Silene.
Rautenberg A, Filatov D, Svennblad B, Heidari N, Oxelman B. Rautenberg A, et al. BMC Evol Biol. 2008 Oct 30;8:299. doi: 10.1186/1471-2148-8-299. BMC Evol Biol. 2008. PMID: 18973668 Free PMC article.
Here we investigate a spectacular case where two parts of the same gene (SlX1/Y1) show conflicting phylogenies within Silene (Caryophyllaceae). SlX1 and SlY1 are sex-linked genes on the sex chromosomes of dioecious members of Silene sect. ...We demonstrate that diff …
Here we investigate a spectacular case where two parts of the same gene (SlX1/Y1) show conflicting phylogenies within Silene (Caryoph …
Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary rates.
Broz AK, Waneka G, Wu Z, Fernandes Gyorfy M, Sloan DB. Broz AK, et al. Genetics. 2021 May 17;218(1):iyab039. doi: 10.1093/genetics/iyab039. Genetics. 2021. PMID: 33704433 Free PMC article.
Consistent with phylogenetic evidence, we found that Silene latifolia maintains low mitochondrial variant frequencies that are comparable with previous measurements in Arabidopsis. ...Moreover, we found an altered mutational spectrum in S. conica heavily biased towa …
Consistent with phylogenetic evidence, we found that Silene latifolia maintains low mitochondrial variant frequencies that are compar …
Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia.
Cegan R, Marais GA, Kubekova H, Blavet N, Widmer A, Vyskot B, Dolezel J, Safár J, Hobza R. Cegan R, et al. BMC Plant Biol. 2010 Aug 18;10:180. doi: 10.1186/1471-2229-10-180. BMC Plant Biol. 2010. PMID: 20718967 Free PMC article.
Recently, the gene AP3 was characterized in the dioecious plant species Silene latifolia. It was suggested that this gene had been transferred from an autosome to the Y chromosome. ...Instead, both X and Y copies show evidence for relaxed selection compared to the autosoma …
Recently, the gene AP3 was characterized in the dioecious plant species Silene latifolia. It was suggested that this gene had been tr …
Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene.
Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. Sloan DB, et al. Genome Biol Evol. 2012;4(3):294-306. doi: 10.1093/gbe/evs006. Epub 2012 Jan 12. Genome Biol Evol. 2012. PMID: 22247429 Free PMC article.
The angiosperm genus Silene exhibits some of the most extreme and rapid divergence ever identified in mitochondrial genome architecture and nucleotide substitution rates. ...To better assess the relationship between mitochondrial and plastid evolution, we sequenced the pla …
The angiosperm genus Silene exhibits some of the most extreme and rapid divergence ever identified in mitochondrial genome architectu …
Duplicative transfer of a MADS box gene to a plant Y chromosome.
Matsunaga S, Isono E, Kejnovsky E, Vyskot B, Dolezel J, Kawano S, Charlesworth D. Matsunaga S, et al. Mol Biol Evol. 2003 Jul;20(7):1062-9. doi: 10.1093/molbev/msg114. Epub 2003 Apr 25. Mol Biol Evol. 2003. PMID: 12716981
In addition to genetic degeneration, the acquisition of autosomal genes may be important in Y chromosome evolution. We here report that the dioecious plant Silene latifolia harbors a complete MADS box gene, SlAP3Y, duplicated onto the Y chromosome. ...Evolutionary sequence …
In addition to genetic degeneration, the acquisition of autosomal genes may be important in Y chromosome evolution. We here report that the …
Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome.
Putintseva YA, Bondar EI, Simonov EP, Sharov VV, Oreshkova NV, Kuzmin DA, Konstantinov YM, Shmakov VN, Belkov VI, Sadovsky MG, Keech O, Krutovsky KV. Putintseva YA, et al. BMC Genomics. 2020 Sep 23;21(1):654. doi: 10.1186/s12864-020-07061-4. BMC Genomics. 2020. PMID: 32972367 Free PMC article.
BACKGROUND: Plant mitochondrial genomes (mitogenomes) can be structurally complex while their size can vary from ~ 222 Kbp in Brassica napus to 11.3 Mbp in Silene conica. To date, in comparison with the number of plant species, only a few plant mitogenomes have been …
BACKGROUND: Plant mitochondrial genomes (mitogenomes) can be structurally complex while their size can vary from ~ 222 Kbp in Brassica napus …
DNA diversity in sex-linked and autosomal genes of the plant species Silene latifolia and Silene dioica.
Filatov DA, Laporte V, Vitte C, Charlesworth D. Filatov DA, et al. Mol Biol Evol. 2001 Aug;18(8):1442-54. doi: 10.1093/oxfordjournals.molbev.a003930. Mol Biol Evol. 2001. PMID: 11470835
We previously reported much lower nucleotide polymorphism in a Y-linked gene (SlY1) of the plant Silene latifolia than in the homologous X-linked gene (SlX1). Here, we report a more extensive study of nucleotide diversity in these sex-linked genes, including a larger S. la …
We previously reported much lower nucleotide polymorphism in a Y-linked gene (SlY1) of the plant Silene latifolia than in the homolog …