Srikumar T - Search Results

1

The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.

Rivkin E, Almeida SM, Ceccarelli DF, Juang YC, MacLean TA, Srikumar T, Huang H, Dunham WH, Fukumura R, Xie G, Gondo Y, Raught B, Gingras AC, Sicheri F, Cordes SP. Rivkin E, et al. Among authors: srikumar t. Nature. 2013 Jun 20;498(7454):318-24. doi: 10.1038/nature12296. Epub 2013 May 24. Nature. 2013. PMID: 23708998 Free PMC article.

2

A ubiquitin and ubiquitin-like protein spectral library.

Srikumar T, Jeram SM, Lam H, Raught B. Srikumar T, et al. Proteomics. 2010 Jan;10(2):337-42. doi: 10.1002/pmic.200900627. Proteomics. 2010. PMID: 19899083

3

A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome.

Srikumar T, Lewicki MC, Raught B. Srikumar T, et al. Mol Syst Biol. 2013 May 28;9:668. doi: 10.1038/msb.2013.23. Mol Syst Biol. 2013. PMID: 23712011 Free PMC article.

4

The use of ubiquitin lysine mutants to characterize E2-E3 linkage specificity: Mass spectrometry offers a cautionary "tail".

Hong JH, Ng D, Srikumar T, Raught B. Hong JH, et al. Among authors: srikumar t. Proteomics. 2015 Sep;15(17):2910-5. doi: 10.1002/pmic.201500058. Epub 2015 Jul 2. Proteomics. 2015. PMID: 26036340

5

A novel mechanism for SUMO system control: regulated Ulp1 nucleolar sequestration.

Sydorskyy Y, Srikumar T, Jeram SM, Wheaton S, Vizeacoumar FJ, Makhnevych T, Chong YT, Gingras AC, Raught B. Sydorskyy Y, et al. Among authors: srikumar t. Mol Cell Biol. 2010 Sep;30(18):4452-62. doi: 10.1128/MCB.00335-10. Epub 2010 Jul 20. Mol Cell Biol. 2010. PMID: 20647537 Free PMC article.

6

Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data.

Liu G, Zhang J, Choi H, Lambert JP, Srikumar T, Larsen B, Nesvizhskii AI, Raught B, Tyers M, Gingras AC. Liu G, et al. Among authors: srikumar t. Curr Protoc Bioinformatics. 2012 Sep;Chapter 8:8.16.1-8.16.32. doi: 10.1002/0471250953.bi0816s39. Curr Protoc Bioinformatics. 2012. PMID: 22948730 Free PMC article.

7

Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites.

Jeram SM, Srikumar T, Pedrioli PG, Raught B. Jeram SM, et al. Among authors: srikumar t. Proteomics. 2009 Feb;9(4):922-34. doi: 10.1002/pmic.200800666. Proteomics. 2009. PMID: 19180541 Review.

8

RNF168 and USP10 regulate topoisomerase IIα function via opposing effects on its ubiquitylation.

Guturi KKN, Bohgaki M, Bohgaki T, Srikumar T, Ng D, Kumareswaran R, El Ghamrasni S, Jeon J, Patel P, Eldin MS, Bristow R, Cheung P, Stewart GS, Raught B, Hakem A, Hakem R. Guturi KKN, et al. Among authors: srikumar t. Nat Commun. 2016 Aug 25;7:12638. doi: 10.1038/ncomms12638. Nat Commun. 2016. PMID: 27558965 Free PMC article.

9

A pathogen type III effector with a novel E3 ubiquitin ligase architecture.

Singer AU, Schulze S, Skarina T, Xu X, Cui H, Eschen-Lippold L, Egler M, Srikumar T, Raught B, Lee J, Scheel D, Savchenko A, Bonas U. Singer AU, et al. Among authors: srikumar t. PLoS Pathog. 2013 Jan;9(1):e1003121. doi: 10.1371/journal.ppat.1003121. Epub 2013 Jan 24. PLoS Pathog. 2013. PMID: 23359647 Free PMC article.

10

An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages.

Jeram SM, Srikumar T, Zhang XD, Anne Eisenhauer H, Rogers R, Pedrioli PG, Matunis M, Raught B. Jeram SM, et al. Among authors: srikumar t. Proteomics. 2010 Jan;10(2):254-65. doi: 10.1002/pmic.200900648. Proteomics. 2010. PMID: 20029837 Free PMC article.

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