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Prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features linked to diets, populations, and diseases.
Tomofuji Y, Kishikawa T, Maeda Y, Ogawa K, Otake-Kasamoto Y, Kawabata S, Nii T, Okuno T, Oguro-Igashira E, Kinoshita M, Takagaki M, Oyama N, Todo K, Yamamoto K, Sonehara K, Yagita M, Hosokawa A, Motooka D, Matsumoto Y, Matsuoka H, Yoshimura M, Ohshima S, Shinzaki S, Nakamura S, Iijima H, Inohara H, Kishima H, Takehara T, Mochizuki H, Takeda K, Kumanogoh A, Okada Y. Tomofuji Y, et al. Among authors: takeda k. Cell Genom. 2022 Nov 30;2(12):100219. doi: 10.1016/j.xgen.2022.100219. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778050 Free PMC article.
Identification of a unique subset of tissue-resident memory CD4+ T cells in Crohn's disease.
Yokoi T, Murakami M, Kihara T, Seno S, Arase M, Wing JB, Søndergaard JN, Kuwahara R, Minagawa T, Oguro-Igashira E, Motooka D, Okuzaki D, Mori R, Ikeda A, Sekido Y, Amano T, Iijima H, Ozono K, Mizushima T, Hirota S, Ikeuchi H, Takeda K. Yokoi T, et al. Among authors: takeda k. Proc Natl Acad Sci U S A. 2023 Jan 3;120(1):e2204269120. doi: 10.1073/pnas.2204269120. Epub 2022 Dec 27. Proc Natl Acad Sci U S A. 2023. PMID: 36574662 Free PMC article.
Reconstruction of the personal information from human genome reads in gut metagenome sequencing data.
Tomofuji Y, Sonehara K, Kishikawa T, Maeda Y, Ogawa K, Kawabata S, Nii T, Okuno T, Oguro-Igashira E, Kinoshita M, Takagaki M, Yamamoto K, Kurakawa T, Yagita-Sakamaki M, Hosokawa A, Motooka D, Matsumoto Y, Matsuoka H, Yoshimura M, Ohshima S, Nakamura S, Inohara H, Kishima H, Mochizuki H, Takeda K, Kumanogoh A, Okada Y. Tomofuji Y, et al. Among authors: takeda k. Nat Microbiol. 2023 Jun;8(6):1079-1094. doi: 10.1038/s41564-023-01381-3. Epub 2023 May 15. Nat Microbiol. 2023. PMID: 37188815 Free PMC article.
Sialylation shapes mucus architecture inhibiting bacterial invasion in the colon.
Taniguchi M, Okumura R, Matsuzaki T, Nakatani A, Sakaki K, Okamoto S, Ishibashi A, Tani H, Horikiri M, Kobayashi N, Yoshikawa HY, Motooka D, Okuzaki D, Nakamura S, Kida T, Kameyama A, Takeda K. Taniguchi M, et al. Among authors: takeda k. Mucosal Immunol. 2023 Oct;16(5):624-641. doi: 10.1016/j.mucimm.2023.06.004. Epub 2023 Jul 13. Mucosal Immunol. 2023. PMID: 37385587 Free article.
Analysis of gut microbiome, host genetics, and plasma metabolites reveals gut microbiome-host interactions in the Japanese population.
Tomofuji Y, Kishikawa T, Sonehara K, Maeda Y, Ogawa K, Kawabata S, Oguro-Igashira E, Okuno T, Nii T, Kinoshita M, Takagaki M, Yamamoto K, Arase N, Yagita-Sakamaki M, Hosokawa A, Motooka D, Matsumoto Y, Matsuoka H, Yoshimura M, Ohshima S, Nakamura S, Fujimoto M, Inohara H, Kishima H, Mochizuki H, Takeda K, Kumanogoh A, Okada Y. Tomofuji Y, et al. Among authors: takeda k. Cell Rep. 2023 Nov 28;42(11):113324. doi: 10.1016/j.celrep.2023.113324. Epub 2023 Nov 6. Cell Rep. 2023. PMID: 37935197 Free article.
Periportal macrophages protect against commensal-driven liver inflammation.
Miyamoto Y, Kikuta J, Matsui T, Hasegawa T, Fujii K, Okuzaki D, Liu YC, Yoshioka T, Seno S, Motooka D, Uchida Y, Yamashita E, Kobayashi S, Eguchi H, Morii E, Tryggvason K, Shichita T, Kayama H, Atarashi K, Kunisawa J, Honda K, Takeda K, Ishii M. Miyamoto Y, et al. Among authors: takeda k. Nature. 2024 Apr 24. doi: 10.1038/s41586-024-07372-6. Online ahead of print. Nature. 2024. PMID: 38658756
Gut microbiome dysbiosis in inflammatory bowel disease.
Lal S, Kandiyal B, Ahuja V, Takeda K, Das B. Lal S, et al. Among authors: takeda k. Prog Mol Biol Transl Sci. 2022;192(1):179-204. doi: 10.1016/bs.pmbts.2022.09.003. Epub 2022 Oct 3. Prog Mol Biol Transl Sci. 2022. PMID: 36280319
5,456 results